Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_N13
(517 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 146 9e-36
05_03_0281 + 11560402-11560569,11561373-11561579,11562966-115631... 37 0.011
01_01_1052 + 8297105-8297422,8298978-8299310,8299820-8301010 36 0.019
07_03_1165 - 24459156-24460139 34 0.078
09_04_0210 + 15644151-15644609 30 0.96
02_05_0473 + 29319824-29322511,29322659-29322820,29324133-293242... 30 1.3
12_02_0397 + 18581301-18581561,18581584-18581676 28 5.1
12_02_0284 - 16791153-16791212,16791392-16791925,16792266-167926... 28 5.1
10_04_0015 + 7586705-7587218,7587294-7588063,7588243-7588278,758... 27 8.9
08_01_1059 - 10775143-10776063 27 8.9
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 146 bits (354), Expect = 9e-36
Identities = 58/87 (66%), Positives = 75/87 (86%)
Frame = +1
Query: 175 MGRKKKKASKPWCWYCNREFDDEKILIQHQKAKHFKCHICHKKLYTGPGLSIHCMQVHKE 354
MG+KKK+ K +C+YC+REFDDEKIL+QHQKAKHFKCH+CHKKL T G++IH +QVHKE
Sbjct: 1 MGKKKKRVEKVFCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKE 60
Query: 355 AIDKVPNSLPNRSNIEIEMYGMEGIPP 435
++ KVPN+ P R + EIE++GM+GIPP
Sbjct: 61 SVTKVPNAKPERESTEIEIFGMQGIPP 87
>05_03_0281 +
11560402-11560569,11561373-11561579,11562966-11563174,
11563261-11563309,11563611-11563673,11563799-11565472
Length = 789
Score = 36.7 bits (81), Expect = 0.011
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 196 ASKPWCWYCNREFDDEKILIQHQKAKHFKCHICHKK 303
A P C +C F + L H +H+ CHIC ++
Sbjct: 161 AGHPMCEFCRSSFYGDNELYTHMSREHYSCHICQRQ 196
>01_01_1052 + 8297105-8297422,8298978-8299310,8299820-8301010
Length = 613
Score = 35.9 bits (79), Expect = 0.019
Identities = 16/48 (33%), Positives = 20/48 (41%)
Frame = +1
Query: 205 PWCWYCNREFDDEKILIQHQKAKHFKCHICHKKLYTGPGLSIHCMQVH 348
P C +C F + L H +HF CHIC + LS Q H
Sbjct: 145 PMCEFCKSPFYGDNELYTHMTREHFSCHICQRYSARLQSLSYLVRQQH 192
>07_03_1165 - 24459156-24460139
Length = 327
Score = 33.9 bits (74), Expect = 0.078
Identities = 16/50 (32%), Positives = 27/50 (54%)
Frame = +1
Query: 235 DDEKILIQHQKAKHFKCHICHKKLYTGPGLSIHCMQVHKEAIDKVPNSLP 384
DD+ + ++ F CH+C+K+ + + H M+VH +K P SLP
Sbjct: 99 DDDAAPVAARREASFPCHLCNKEFGSRKAVHGH-MRVHHAENEKEPMSLP 147
>09_04_0210 + 15644151-15644609
Length = 152
Score = 30.3 bits (65), Expect = 0.96
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +1
Query: 211 CWYCNREFDDEKILIQHQKAKHFKCHICHKKLYTGPGLSIH 333
C YC+R+FD + L HQ A ++ + ++ L H
Sbjct: 36 CMYCDRKFDSSQALGGHQNAHKYERSLAKRRREIAAALRAH 76
>02_05_0473 +
29319824-29322511,29322659-29322820,29324133-29324249,
29324360-29324469,29324504-29324540,29324696-29324862,
29325002-29325089,29325163-29325270
Length = 1158
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = +1
Query: 229 EFDDEKILIQHQKAKH----FKCHICHKKLYTGPGLSIHCMQVHKEAI 360
E D +++ + H KC IC ++ GL +H +VHK+ +
Sbjct: 443 ENQDGSVMVLREDGTHPSPGLKCKICSQEFSDDQGLGLHWTEVHKKEV 490
>12_02_0397 + 18581301-18581561,18581584-18581676
Length = 117
Score = 27.9 bits (59), Expect = 5.1
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -3
Query: 251 RIFSSSNSLLQYQHQGLDAFFFF 183
R+F++ N+++Q QH L A+F F
Sbjct: 86 RMFANINNMMQQQHDDLQAYFRF 108
>12_02_0284 -
16791153-16791212,16791392-16791925,16792266-16792637,
16793754-16794105,16794107-16794795,16821179-16821574
Length = 800
Score = 27.9 bits (59), Expect = 5.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 245 FSSSNSLLQYQHQGLDAFFFFLPILTIND 159
F++ N+++Q QH L A+F F + I D
Sbjct: 737 FTNINNMMQQQHDDLQAYFRFQSSILIKD 765
>10_04_0015 +
7586705-7587218,7587294-7588063,7588243-7588278,
7588591-7588662
Length = 463
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -3
Query: 245 FSSSNSLLQYQHQGLDAFFFFLPILTIND 159
F++ N+++Q QH L A+F F + I D
Sbjct: 384 FANINNMMQQQHDDLQAYFRFQGLNPIKD 412
>08_01_1059 - 10775143-10776063
Length = 306
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 277 FKCHICHKKLYTGPGLSIHCMQVHK 351
FKC+ C +K YT L H HK
Sbjct: 107 FKCNYCQRKFYTSQALGGH-QNAHK 130
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,831,208
Number of Sequences: 37544
Number of extensions: 191886
Number of successful extensions: 604
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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