Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_N10
(652 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0371 + 28364896-28366182,28366510-28366623,28366861-283671... 35 0.065
01_05_0397 + 21753095-21753814 29 2.4
08_02_1417 - 26922775-26922986,26923102-26923291,26923816-269239... 28 5.6
11_01_0438 - 3349506-3351239 28 7.4
02_04_0395 + 22590097-22590343,22590566-22590921 28 7.4
08_02_1277 + 25823835-25825113,25825201-25825418,25825501-258257... 27 9.8
07_03_1382 - 26170563-26170631,26171151-26171843 27 9.8
01_01_0623 + 4672581-4673413,4674274-4674389,4674694-4674902,467... 27 9.8
>02_05_0371 +
28364896-28366182,28366510-28366623,28366861-28367125,
28367981-28368105
Length = 596
Score = 34.7 bits (76), Expect = 0.065
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = -1
Query: 439 LRAVGDRGVGGELDNSAGVLGIVGVN-IQASTDNSSALHDDLVTVSRSSRNAVQDFDRQN 263
+R + D GVG E++ G I+G+ +Q STD+S+++ +++ + R + Q
Sbjct: 390 MRRMEDVGVGLEIETRPGGCAIIGLKPLQLSTDHSTSIEEEVHRIKREHPDDDQCIVNDR 449
Query: 262 VAQVERIEVNRILGVAF 212
V R++V R G +
Sbjct: 450 VK--GRLKVTRAFGAGY 464
>01_05_0397 + 21753095-21753814
Length = 239
Score = 29.5 bits (63), Expect = 2.4
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 356 LDVNPNDSQHTCRVVELASNTAIADSAKVKSCAVCNK 466
+D N + ++H +++ +TA +DS V SC VC +
Sbjct: 8 VDTNWSAAEHDHIAIDIGDSTAGSDSDDVPSCVVCTE 44
>08_02_1417 -
26922775-26922986,26923102-26923291,26923816-26923928,
26924032-26924112,26925329-26926661
Length = 642
Score = 28.3 bits (60), Expect = 5.6
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = -3
Query: 176 SSYPVHCYIGST*CNNLFRIALVEQRRRMLHFLP 75
+ + ++CYIGS+ + + +VE+ RR+ + +P
Sbjct: 137 NGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMP 170
>11_01_0438 - 3349506-3351239
Length = 577
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = +2
Query: 296 GAPRYCHKIVMKSGTVV---RTCLDVNPNDSQHTCRVVELASNTAIAD 430
GAPR +++ +++GT RTC + P D+ + E+ A+ D
Sbjct: 308 GAPRGAYRLALRNGTFAPADRTCGRIAPTDANPVWAMEEMPLPRAMGD 355
>02_04_0395 + 22590097-22590343,22590566-22590921
Length = 200
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -1
Query: 427 GDRGVGGELDNSAGVLGIVGVNIQASTDNSSALHD 323
G GVGGE+ +G +V V + A T +AL D
Sbjct: 166 GGEGVGGEVAGCSGAKDVVVVTVFAVTGGMAALVD 200
>08_02_1277 + 25823835-25825113,25825201-25825418,25825501-25825724,
25826468-25827080,25827735-25827775,25830549-25831191,
25832595-25834012,25834110-25834251,25834415-25834522,
25835346-25835558,25835643-25835753,25836099-25836293,
25836555-25836695,25836835-25836909
Length = 1806
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +3
Query: 138 SSATNVTVNRIRTAGTRSRAPNPQ*NATPRIRLTSIRST 254
+S+TN +++ ++T+G S P P N SI ST
Sbjct: 1039 NSSTNFSIDAVKTSGLNSWTPVPVTNTVRSTHSNSISST 1077
>07_03_1382 - 26170563-26170631,26171151-26171843
Length = 253
Score = 27.5 bits (58), Expect = 9.8
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 371 NDSQHTCRVVELASNTAIADSAKVKSCAVC 460
ND H V+++ + A A + +SCAVC
Sbjct: 42 NDDDHHSHVIDIDAAAAAAAAGGRRSCAVC 71
>01_01_0623 +
4672581-4673413,4674274-4674389,4674694-4674902,
4675953-4676072,4676185-4676313,4676394-4676442,
4676899-4676970,4677574-4677707,4677798-4677915,
4678332-4678541,4678630-4678942,4679539-4679632,
4679854-4679962,4680243-4680514,4680597-4680724,
4680832-4681066,4681570-4681758,4681845-4682128,
4682218-4682398,4682486-4682728,4682904-4682986,
4683119-4683227,4687996-4688091,4688675-4688764,
4688881-4689129,4689233-4689412,4690179-4690250,
4691385-4691474,4691605-4691705,4691794-4691959
Length = 1757
Score = 27.5 bits (58), Expect = 9.8
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Frame = +2
Query: 173 NCGD---PFKSAKPPVECNTQDSINFNTLYLRNILPVEVLNSVTGAPRYCHKI----VMK 331
NC D P + PP +CN S++F TL + + +++ V G + ++ V
Sbjct: 526 NCDDDICPVEIIHPPEDCNLNSSLSF-TLQVCRVEDIDIWGLVQGTVIHFNRARSVSVHT 584
Query: 332 SGTVVRTCL 358
SGT+ T L
Sbjct: 585 SGTISATGL 593
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,634,665
Number of Sequences: 37544
Number of extensions: 321250
Number of successful extensions: 839
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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