Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_N08
         (403 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar...    97   1e-21
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    26   2.5  
SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces...    24   7.7  

>SPAC15E1.03 |rpl36a||60S ribosomal protein
           L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 96.7 bits (230), Expect = 1e-21
 Identities = 49/107 (45%), Positives = 60/107 (56%), Gaps = 2/107 (1%)
 Frame = +1

Query: 46  MVNVPKQRRTYXXXXXXXXXXXX--SQYKKSKXKARCPGXEDGMIXKQQGYGGQSKPIFX 219
           MVN+PK R+TY              +QYKK        G       KQ G+GGQ+KP+F 
Sbjct: 1   MVNIPKTRKTYCPGKNCRKHTVHRVTQYKKGPDSKLAQGKRR-YDRKQSGFGGQTKPVFH 59

Query: 220 XXXXXXXXIVLRLECADCKVRSQVALKRCKHFELGGDKKRKGQMIQF 360
                   +VLRLEC  CK ++Q+ LKRCKHFELGG+KK KG  IQF
Sbjct: 60  KKAKVTKKVVLRLECVSCKYKNQLVLKRCKHFELGGEKKTKGAAIQF 106


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 143 AFXLDFLYCDTLCTLWHL 90
           A  L +LY DTL + WHL
Sbjct: 683 AILLHYLYTDTLLSPWHL 700


>SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 129

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 110 LCTLWHLHFLQYVLRCFGTFTIFE 39
           L TL+H   + + + C G F +F+
Sbjct: 75  LLTLFHFPIIGFFVECLGFFNLFK 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,437,849
Number of Sequences: 5004
Number of extensions: 23549
Number of successful extensions: 59
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)