Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_N05
(507 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein Rpp1-1|Sc... 69 3e-13
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 60 1e-10
SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein Rpp1-3|... 54 9e-09
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 27 1.6
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 27 1.6
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 27 1.6
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 27 1.6
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 8.6
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M... 25 8.6
SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces pombe... 25 8.6
>SPAC644.15 |rpp101|rpp1-1|60S acidic ribosomal protein
Rpp1-1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 69.3 bits (162), Expect = 3e-13
Identities = 31/54 (57%), Positives = 42/54 (77%)
Frame = +3
Query: 153 TGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVGAAPAAGWSA 314
T +K+ ++ KAA VDVEP W +FAKALEG ++++L+ NIGSG GAAP AG +A
Sbjct: 23 TSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLNIGSGAGAAPVAGGAA 76
Score = 27.1 bits (57), Expect = 1.6
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +1
Query: 388 SDDDMGFGLFD 420
SD+DMGFGLFD
Sbjct: 99 SDEDMGFGLFD 109
Score = 25.0 bits (52), Expect = 6.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 86 VSKAELACVYSALILVDDDV 145
+S +ELA YSALIL D+ +
Sbjct: 1 MSASELATSYSALILADEGI 20
>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 60.5 bits (140), Expect = 1e-10
Identities = 29/51 (56%), Positives = 39/51 (76%)
Frame = +3
Query: 153 TGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGSGVGAAPAAG 305
T +K+ ++ KAA VDVEP W +FAKALEG ++++L+ NIGS AAPAAG
Sbjct: 23 TSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLNIGS-AAAAPAAG 72
Score = 27.1 bits (57), Expect = 1.6
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +1
Query: 388 SDDDMGFGLFD 420
SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
Score = 25.0 bits (52), Expect = 6.5
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 86 VSKAELACVYSALILVDDDV 145
+S +ELA YSALIL D+ +
Sbjct: 1 MSASELATSYSALILADEGI 20
>SPCP1E11.09c |rpp103|rpp1-3|60S acidic ribosomal protein
Rpp1-3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 109
Score = 54.4 bits (125), Expect = 9e-09
Identities = 25/51 (49%), Positives = 37/51 (72%), Gaps = 1/51 (1%)
Frame = +3
Query: 153 TGEKISTILKAAAVDVEPYWPGLFAKALEGINVRDLITNIGS-GVGAAPAA 302
T +K+ ++ KA V+VEP W +FAKALEG ++++L+ NIGS G +AP A
Sbjct: 23 TSDKLLSLTKAGNVEVEPIWATIFAKALEGKDLKELLLNIGSAGAASAPTA 73
Score = 27.1 bits (57), Expect = 1.6
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +1
Query: 388 SDDDMGFGLFD 420
SD+DMGFGLFD
Sbjct: 99 SDEDMGFGLFD 109
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 27.1 bits (57), Expect = 1.6
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +1
Query: 388 SDDDMGFGLFD 420
SD+DMGFGLFD
Sbjct: 302 SDEDMGFGLFD 312
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 27.1 bits (57), Expect = 1.6
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +1
Query: 388 SDDDMGFGLFD 420
SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 27.1 bits (57), Expect = 1.6
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +1
Query: 388 SDDDMGFGLFD 420
SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 27.1 bits (57), Expect = 1.6
Identities = 10/11 (90%), Positives = 11/11 (100%)
Frame = +1
Query: 388 SDDDMGFGLFD 420
SD+DMGFGLFD
Sbjct: 100 SDEDMGFGLFD 110
>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 315
Score = 24.6 bits (51), Expect = 8.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 50 GLRQLARSKLKMVSKAELACVYSAL 124
G+ QL + ++SKA+L C Y L
Sbjct: 159 GMLQLDMPHVNILSKADLLCTYGTL 183
>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 757
Score = 24.6 bits (51), Expect = 8.6
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -1
Query: 258 GHGH*CLPRLWRTDL 214
G+G CLP LWR D+
Sbjct: 402 GNGVQCLPLLWRQDI 416
>SPBC354.15 |fap1||L-pipecolate oxidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 24.6 bits (51), Expect = 8.6
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -1
Query: 261 SGHGH*CLPRLWRTDLANMALHLQPPLSRWWKFSHQ 154
SGHG P L + + M L+ PL + W++ +
Sbjct: 357 SGHGFKFFPILGKYSIGCMFRELEEPLLKKWRWKKE 392
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,701,039
Number of Sequences: 5004
Number of extensions: 28522
Number of successful extensions: 73
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -