Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_N02
(541 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 154 7e-39
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 87 1e-18
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 85 8e-18
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 85 8e-18
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 83 3e-17
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 79 4e-16
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 62 4e-11
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 60 2e-10
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c... 31 0.082
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 27 1.8
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc... 25 5.4
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 25 5.4
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 25 7.2
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa... 25 7.2
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 25 9.5
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 25 9.5
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 154 bits (374), Expect = 7e-39
Identities = 72/151 (47%), Positives = 105/151 (69%)
Frame = +2
Query: 83 MALHVPKAPGVPQMLKDGARMFSGLEEAVYRNINACKQFAQSVRSAYGPNGMNKMIINHI 262
MAL VPKA G PQ+ ++G R+ G+E+AV RN NA ++ ++ R++ GPNG NK+++NH+
Sbjct: 1 MALRVPKASG-PQLFREGYRIMQGVEDAVIRNCNAIRELSEITRTSLGPNGKNKIVVNHL 59
Query: 263 DKQFVTSDAGTIIRELDVEHPAAKLMVLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXR 442
+ F+T+DA TIIREL+V HPAAKL+V A+Q Q+ E+GD NFV+V +G R
Sbjct: 60 QQTFLTNDAATIIRELEVIHPAAKLVVDATQQQENELGDAANFVVVFTGELLAKAENMIR 119
Query: 443 LGVTTSEIADGYERALDKCLEILPSLICNEI 535
+G+T EIA GYE AL +E+L + ++I
Sbjct: 120 MGLTPLEIAKGYEMALSHTMEVLEEICADKI 150
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 87.4 bits (207), Expect = 1e-18
Identities = 46/120 (38%), Positives = 72/120 (60%)
Frame = +2
Query: 161 EAVYRNINACKQFAQSVRSAYGPNGMNKMIINHIDKQFVTSDAGTIIRELDVEHPAAKLM 340
+AV +I A K A VR++ GP G++K++I+ + VT+D TI+ +++VEH AKL+
Sbjct: 34 DAVKSHILATKTVANIVRTSLGPRGLDKILISPDGEITVTNDGATILDQMEVEHQIAKLL 93
Query: 341 VLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERALDKCLEILPSL 520
V S+ QD E+GDGT V+VL+G G+ IADGYE+A ++ L ++
Sbjct: 94 VQLSKSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGYEKACQVAVKHLDAI 153
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 84.6 bits (200), Expect = 8e-18
Identities = 47/135 (34%), Positives = 77/135 (57%)
Frame = +2
Query: 83 MALHVPKAPGVPQMLKDGARMFSGLEEAVYRNINACKQFAQSVRSAYGPNGMNKMIINHI 262
M+L P+ P + +LK+G G + + NINAC ++R+ GP G +K++++
Sbjct: 1 MSLGGPQIPVI--VLKEGTDDSQGRGQLL-SNINACVAVQDTIRTTLGPLGADKLMVDDR 57
Query: 263 DKQFVTSDAGTIIRELDVEHPAAKLMVLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXR 442
+ +++D TI++ LD+ HPAAK +V ++ QDAEVGDGT V+V +G
Sbjct: 58 GEVVISNDGATIMKLLDIVHPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVE 117
Query: 443 LGVTTSEIADGYERA 487
GV++ I GY +A
Sbjct: 118 DGVSSHLIIRGYRKA 132
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 84.6 bits (200), Expect = 8e-18
Identities = 46/129 (35%), Positives = 71/129 (55%)
Frame = +2
Query: 101 KAPGVPQMLKDGARMFSGLEEAVYRNINACKQFAQSVRSAYGPNGMNKMIINHIDKQFVT 280
KA VP +D + +E NI A + A ++R++ GP GM+KMI + +T
Sbjct: 3 KAATVPVAFQDREKP----QEVRLSNIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILT 58
Query: 281 SDAGTIIRELDVEHPAAKLMVLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTS 460
+D TI++ L V HPAAK++V S QD E GDGT V++L+G + G+ +
Sbjct: 59 NDGATILKHLSVLHPAAKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPT 118
Query: 461 EIADGYERA 487
IA+ ++RA
Sbjct: 119 VIAESFQRA 127
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 82.6 bits (195), Expect = 3e-17
Identities = 45/141 (31%), Positives = 78/141 (55%)
Frame = +2
Query: 101 KAPGVPQMLKDGARMFSGLEEAVYRNINACKQFAQSVRSAYGPNGMNKMIINHIDKQFVT 280
+AP + G ++ SG E+ +N+ A A V+S+ GP G++KM+++ I VT
Sbjct: 3 QAPRESTLFLSGEKI-SG-EDVRNQNVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVT 60
Query: 281 SDAGTIIRELDVEHPAAKLMVLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTS 460
+D TI+ LDVEHPA K++V +Q QD EVGDGT V++++ + + +
Sbjct: 61 NDGATILSLLDVEHPAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPT 120
Query: 461 EIADGYERALDKCLEILPSLI 523
I GY A+ + ++ + ++
Sbjct: 121 TIITGYRLAIREAVKFMTDVL 141
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 79.0 bits (186), Expect = 4e-16
Identities = 40/120 (33%), Positives = 65/120 (54%)
Frame = +2
Query: 161 EAVYRNINACKQFAQSVRSAYGPNGMNKMIINHIDKQFVTSDAGTIIRELDVEHPAAKLM 340
+A NI A K A +R+ GP M KM+++ + +T+D I+RE++V HPAAK M
Sbjct: 19 KAQMSNIQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTNDGHAILREIEVAHPAAKSM 78
Query: 341 VLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERALDKCLEILPSL 520
+ ++ QD EVGDGT VI+L+G + + +++AL+ L I+ +
Sbjct: 79 IELARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVMIRSFKQALEDALSIIDEI 138
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 62.5 bits (145), Expect = 4e-11
Identities = 35/119 (29%), Positives = 58/119 (48%)
Frame = +2
Query: 161 EAVYRNINACKQFAQSVRSAYGPNGMNKMIINHIDKQFVTSDAGTIIRELDVEHPAAKLM 340
+A+ NI+A ++S GP G KM+++ +T D ++ E+ +++P A +
Sbjct: 16 QALQVNISAAIGLQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVLLTEMQIQNPTASCI 75
Query: 341 VLASQMQDAEVGDGTNFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERALDKCLEILPS 517
A+ QD GDGT V +L G R G+ S I+DG+ A ++ L L S
Sbjct: 76 AKAATAQDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGFNLAKNEALTFLDS 134
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 60.1 bits (139), Expect = 2e-10
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
Frame = +2
Query: 209 VRSAYGPNGMNKMIINHIDKQFV-TSDAGTIIRELDVEHPAAKLMVLASQMQDAEVGDGT 385
V+S GP GM+K++ ++ V T+D TI++ + +++ AAK++V S++QD EVGDGT
Sbjct: 36 VKSTLGPKGMDKILQSNSSGDIVVTNDGATILKSIALDNAAAKVLVNISKVQDDEVGDGT 95
Query: 386 NFVIVLSGXXXXXXXXXXRLGVTTSEIADGYERALDKCLEIL 511
V V + + I DGY A ++ L
Sbjct: 96 TSVCVFAAELLRQAEIMVNAKIHPQVIIDGYRIATKTAIDAL 137
>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 137
Score = 31.5 bits (68), Expect = 0.082
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = -2
Query: 222 YAERTLCANCLQALIFLYTASSNPENIRA 136
+AER C NC L F YT NP I A
Sbjct: 65 FAERIFCKNCGTTLYFAYTNGKNPYFINA 93
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 27.1 bits (57), Expect = 1.8
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 432 NYSAWE*LPVKLLMDMREHLTNVWKSFLLS 521
NYS WE + + L +R L N KSF+L+
Sbjct: 559 NYSLWEAVGISLNYIVRNGLINSHKSFVLT 588
>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 517
Score = 25.4 bits (53), Expect = 5.4
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = -3
Query: 296 WCQHHW*QIAYQY 258
W HHW Q+ YQ+
Sbjct: 421 WAVHHWKQMGYQF 433
>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 343
Score = 25.4 bits (53), Expect = 5.4
Identities = 17/61 (27%), Positives = 27/61 (44%)
Frame = -2
Query: 381 PSPTSASCI*LASTISLAAGCSTSNSLMMVPASLVTNCLSI*LMIILFMPLGPYAERTLC 202
P PTSAS AS SL G N ++ +V + +++I+F L + +
Sbjct: 69 PEPTSASTPPSASASSLPNGAQKHNHTGVIAGPIVGVLGGLIVLVIIFYCLRHFKRKKFL 128
Query: 201 A 199
A
Sbjct: 129 A 129
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 25.0 bits (52), Expect = 7.2
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = -2
Query: 525 QMREGRISRHLSSALSYPSAISLVV 451
+ + R +RH++S L+YP +I ++
Sbjct: 128 KFQSSRTARHITSLLTYPMSIGAIL 152
>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
Swd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 357
Score = 25.0 bits (52), Expect = 7.2
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -2
Query: 351 LASTISLAAGCSTSNSLMMVPASLVTNCLSI*LMIILFMP 232
LAST + ST N L ++P+S N L I+ F P
Sbjct: 302 LASTTPTSNSHSTENPLAIIPSSTSKNLLPETPSIVRFNP 341
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -3
Query: 437 VVPLQLLIMLLTRQSQSWYH 378
+ PL + LL +QSWYH
Sbjct: 1329 IPPLDRFLNLLGASAQSWYH 1348
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 24.6 bits (51), Expect = 9.5
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 155 LEEAVYRNINACKQFAQSVRSAYGPNGMNKMI 250
++E ++I CK+ V AYGPNG +K I
Sbjct: 71 VKELFVKSIGPCKR----VSLAYGPNGRSKGI 98
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,005,727
Number of Sequences: 5004
Number of extensions: 36955
Number of successful extensions: 90
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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