Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_M23
(385 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal pro... 194 3e-51
SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein S4|Schizos... 193 7e-51
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch... 193 9e-51
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 27 0.76
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 25 4.1
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 25 4.1
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 25 5.4
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 25 5.4
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ... 24 7.1
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 24 7.1
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc... 24 7.1
SPAC17H9.07 |||signal recognition particle subunit Srp21 |Schizo... 24 7.1
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 24 9.4
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 24 9.4
>SPBC19F8.08 |rps401|rps4-1, rps4, SPBC25H2.17c|40S ribosomal
protein S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 194 bits (474), Expect = 3e-51
Identities = 85/114 (74%), Positives = 97/114 (85%)
Frame = +2
Query: 35 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 214
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Query: 215 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRI 376
V I+ QRLIKVDGKVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRI
Sbjct: 61 VKAILMQRLIKVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRI 114
>SPAC959.07 |rps403|rps4-3, rps4|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 193 bits (471), Expect = 7e-51
Identities = 84/114 (73%), Positives = 97/114 (85%)
Frame = +2
Query: 35 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 214
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Query: 215 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRI 376
V I+ QRLIKVDGKVRTD T+P GFMDV+S++KT E FRL+YD+KGRFT+HRI
Sbjct: 61 VKAILMQRLIKVDGKVRTDSTFPTGFMDVISVDKTGEHFRLVYDIKGRFTVHRI 114
>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
S4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 262
Score = 193 bits (470), Expect = 9e-51
Identities = 84/114 (73%), Positives = 97/114 (85%)
Frame = +2
Query: 35 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 214
M RGPKKHLKR+ AP W+LDKL G YAP+PS GPHK RECLPL++FLRNRLKYAL G E
Sbjct: 1 MVRGPKKHLKRVAAPHHWLLDKLSGTYAPKPSPGPHKARECLPLIVFLRNRLKYALNGRE 60
Query: 215 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRI 376
V I+ QRLI+VDGKVRTD T+P GFMDV+S+EKT E FRL+YD+KGRFT+HRI
Sbjct: 61 VKAILMQRLIQVDGKVRTDSTFPTGFMDVISVEKTGEHFRLVYDIKGRFTVHRI 114
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 27.5 bits (58), Expect = 0.76
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Frame = -1
Query: 289 SSRISRVSPNFPIN--LYEALFH-NFQDFVSGQSILQTIPQENHQGQALAQLVGT 134
SS+ + P+ P++ +E F NFQ S L IP++ G ++A+++GT
Sbjct: 27 SSKDENLQPSIPLSPVAFELDFSGNFQFISDNSSELLDIPKDKIIGHSVAEVLGT 81
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 25.0 bits (52), Expect = 4.1
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 164 LVIFLRNRLKYALTGNEVLKIV 229
L+ F+ RL++ LT E+LKI+
Sbjct: 145 LIDFMNTRLQHRLTEGEILKIL 166
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 25.0 bits (52), Expect = 4.1
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Frame = +2
Query: 104 GGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYP 283
G + A RP +G K+ V LRN A + IV R ++ + RT P+
Sbjct: 201 GNLNARRPQSGLLKIT-----VGSLRNVTHSAGISKQTEMIVAIRAEDLE-RARTRPSRT 254
Query: 284 AGFMDV--VSIEKTNELFRLIYDVK 352
F + + +EKTNE+ ++Y+ K
Sbjct: 255 DRFNETFEIDLEKTNEVEIVVYEKK 279
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 24.6 bits (51), Expect = 5.4
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 282 G*VGSVLTFPSTFMRRCFTIFR 217
G +G LTFP+ +RR F + R
Sbjct: 237 GIIGQTLTFPADVLRRRFQVNR 258
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 24.6 bits (51), Expect = 5.4
Identities = 8/29 (27%), Positives = 18/29 (62%)
Frame = -1
Query: 277 SRVSPNFPINLYEALFHNFQDFVSGQSIL 191
S++ P I+LY L+H+ +++ Q ++
Sbjct: 410 SKIDPRVVISLYPDLYHSELSYIAFQGVI 438
>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 24.2 bits (50), Expect = 7.1
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +3
Query: 24 TCPTWREALRS 56
TCPTWR +L S
Sbjct: 418 TCPTWRRSLSS 428
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 24.2 bits (50), Expect = 7.1
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +2
Query: 149 RECLPLVIFLRNRLK-YALTGNEVLKIVKQRLIKV 250
+ECLP F +N+L Y L + VL++ K+R + V
Sbjct: 52 KECLPKFSF-QNKLDFYFLFSDRVLQLQKERKVLV 85
>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 383
Score = 24.2 bits (50), Expect = 7.1
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +2
Query: 86 WMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVK 232
+ L KLG V P+ T H LR+ + L + + ++ +EV+ I+K
Sbjct: 277 YKLKKLGVVAEPQ-LTSIHSLRDDWSFLTLLSDGITDVVSDDEVVDIIK 324
>SPAC17H9.07 |||signal recognition particle subunit Srp21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 120
Score = 24.2 bits (50), Expect = 7.1
Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +2
Query: 167 VIFLRNRLKYALTGNEVLKIVKQRLI--KVDGKVRTDPTYP 283
++ + N+L Y TGNE+ +Q ++ V + + +P+ P
Sbjct: 67 LLLIANKLSYVSTGNEIPPEPEQEVVASPVTEQKKAEPSAP 107
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 23.8 bits (49), Expect = 9.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 132 VDGLGAYTPPSLSNIHALGAFKRFKCF 52
+D LG++T SLSN A +R +CF
Sbjct: 1465 IDALGSFTTFSLSNNLASLHAERQRCF 1491
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 23.8 bits (49), Expect = 9.4
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = -2
Query: 171 ITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAFKRFKCFLGPRAMLDKY*IEKKK 4
I + K R+++G L LSNI A A K C R D+Y + K +
Sbjct: 663 IGKRKSKRDIFGRQKVLPTGISEGLSNIPAKEAIKTADCHGWMRKRSDRYGVWKSR 718
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,643,546
Number of Sequences: 5004
Number of extensions: 32762
Number of successful extensions: 93
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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