Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_M23
(385 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0058 + 17548945-17548947,17549234-17549281,17549618-175496... 184 2e-47
02_01_0047 - 316960-317397,317647-317744,317837-318017,318122-31... 182 1e-46
01_03_0277 + 14496298-14496300,14496875-14496952,14497061-144972... 182 1e-46
09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078 31 0.31
02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258 29 1.3
12_02_0513 - 19906147-19906271,19906470-19906791,19907091-199076... 29 1.7
08_02_0864 + 21994286-21994989,21996257-21996958,21997221-219973... 29 1.7
08_02_1359 + 26382605-26382815,26382907-26382998,26383722-263837... 27 3.8
04_01_0252 - 3329712-3331061 27 3.8
02_05_0672 + 30775458-30775523,30775594-30775662,30775748-307757... 27 3.8
07_03_0183 - 14822973-14823139,14823232-14823627,14823861-148240... 27 5.1
04_04_0950 + 29609484-29611025 27 6.7
03_06_0588 - 34924061-34924644,34924662-34925058 27 6.7
01_01_0001 + 2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,7... 27 6.7
12_02_0566 - 20531659-20531696,20533101-20534094 26 8.9
09_03_0029 + 11724581-11724583,11726413-11726610,11726874-117270... 26 8.9
02_05_0605 + 30300977-30301912 26 8.9
>05_04_0058 +
17548945-17548947,17549234-17549281,17549618-17549695,
17549952-17550132,17550223-17550320,17550827-17551258
Length = 279
Score = 184 bits (449), Expect = 2e-47
Identities = 84/113 (74%), Positives = 94/113 (83%)
Frame = +2
Query: 38 ARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEV 217
ARG KKHLKRLNAP WMLDKLGG +AP+PS+GPHK RECLPL++ LRNRLKYALT EV
Sbjct: 18 ARGLKKHLKRLNAPSHWMLDKLGGAFAPKPSSGPHKARECLPLILILRNRLKYALTYREV 77
Query: 218 LKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRI 376
+ I+ QR + VDGKVRTD TYPAGFMDVVSI KT E FRL+YD KGRF +H I
Sbjct: 78 ISILMQRHVMVDGKVRTDKTYPAGFMDVVSIAKTGENFRLLYDTKGRFRLHSI 130
>02_01_0047 -
316960-317397,317647-317744,317837-318017,318122-318199,
319023-319025
Length = 265
Score = 182 bits (442), Expect = 1e-46
Identities = 81/114 (71%), Positives = 95/114 (83%)
Frame = +2
Query: 35 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 214
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 215 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRI 376
V+ I+ QR + VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + +
Sbjct: 61 VISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSV 114
>01_03_0277 +
14496298-14496300,14496875-14496952,14497061-14497241,
14497348-14497445,14497542-14497979
Length = 265
Score = 182 bits (442), Expect = 1e-46
Identities = 81/114 (71%), Positives = 95/114 (83%)
Frame = +2
Query: 35 MARGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNE 214
MARG KKHLKRLNAPK WMLDKLGG +AP+PS+GPHK RECLPL++ +RNRLKYALT E
Sbjct: 1 MARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYRE 60
Query: 215 VLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRI 376
V+ I+ QR + VDGKVRTD TYPAGFMDV+SI KT E +RL+YD KGRF + +
Sbjct: 61 VISILMQRHVLVDGKVRTDKTYPAGFMDVISIPKTGENYRLLYDTKGRFRLQSV 114
>09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078
Length = 574
Score = 31.1 bits (67), Expect = 0.31
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -3
Query: 179 SGKSPGASTRATCGDRLTVSVHTHRQVCPTSMLW 78
+G+SPG + RA GD L V+VH T++ W
Sbjct: 50 NGESPGPTIRAAQGDTLVVTVHNMLDTENTAIHW 83
>02_04_0117 + 19914704-19915830,19916575-19916860,19917047-19918258
Length = 874
Score = 29.1 bits (62), Expect = 1.3
Identities = 17/43 (39%), Positives = 22/43 (51%)
Frame = -2
Query: 192 FRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLSNIHALGAFKR 64
F L ++ + L G G+G Y PPSLSN + AFKR
Sbjct: 35 FNVALNRLPASAGASPLLGHGHGVGVYYPPSLSNA-LVAAFKR 76
>12_02_0513 -
19906147-19906271,19906470-19906791,19907091-19907695,
19908569-19908617
Length = 366
Score = 28.7 bits (61), Expect = 1.7
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -1
Query: 151 AQLVGTG*RSRCIHTAK-FVQHPCFGSV*ALQMLLRASR 38
++ V G R+RC+H A V+ P FG + ++L ASR
Sbjct: 39 SRAVKAGRRARCVHHASALVRPPSFGRLAMFVLILSASR 77
>08_02_0864 + 21994286-21994989,21996257-21996958,21997221-21997374,
21997494-21997838,21998323-21999240,21999312-21999640,
21999709-21999832,21999901-22000071,22000188-22001648,
22002647-22002910,22003866-22004189
Length = 1831
Score = 28.7 bits (61), Expect = 1.7
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = +1
Query: 76 SQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPEESS----EVCFDRKRSPENCETTP 240
+QS+ V + RCV ETV + P + R+ G+F + + FD+ + +CE P
Sbjct: 894 NQSILVSLSSRCVWKETVCQRPHLLRIKYYGNFDKPLGRFLRDQLFDQNNNCISCELPP 952
>08_02_1359 +
26382605-26382815,26382907-26382998,26383722-26383791,
26383895-26384013,26384580-26384676,26384781-26384860,
26384986-26385180,26385460-26385520,26386408-26386468,
26386900-26386993,26387085-26387157,26387158-26387270,
26387444-26387587
Length = 469
Score = 27.5 bits (58), Expect = 3.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 224 FSGLRFRSKHTSDDSSGKSPGASTRATCG 138
FSGLR S+ S S SP A++ CG
Sbjct: 9 FSGLRLDSRRLSSSSLPTSPSAASSNGCG 37
>04_01_0252 - 3329712-3331061
Length = 449
Score = 27.5 bits (58), Expect = 3.8
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = -3
Query: 143 CGDRLTVSVHTHRQVCPTSMLWERLSASNAS*GLAPCWTSIKS 15
C D+ V TH+ V P S W+R AS G W S
Sbjct: 112 CTDQERVGFATHQLVGPASEWWDRYEASRPE-GHTITWNEFSS 153
>02_05_0672 + 30775458-30775523,30775594-30775662,30775748-30775797,
30775869-30775929,30776016-30776381,30776542-30776754,
30776826-30777056,30777502-30777615,30777703-30778495,
30778535-30778905,30779007-30779378,30779448-30780438,
30781068-30781141,30781953-30782030,30782448-30782525
Length = 1308
Score = 27.5 bits (58), Expect = 3.8
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -1
Query: 298 IHKSSRISRVSPNFPINLYEALFHNFQDFVSG 203
+H+SS ++R++P F + Y L H + ++ G
Sbjct: 1024 LHRSSSVARIAPEFVV--YSELLHTKRSYMHG 1053
>07_03_0183 -
14822973-14823139,14823232-14823627,14823861-14824005,
14824174-14824380
Length = 304
Score = 27.1 bits (57), Expect = 5.1
Identities = 11/36 (30%), Positives = 16/36 (44%)
Frame = -2
Query: 192 FRRFLRKITRGKHSRNLWGPVDGLGAYTPPSLSNIH 85
++RF+ K G W + G Y P +NIH
Sbjct: 64 WQRFVVKGISGFEKNRFWEDISGASIYKKPRTNNIH 99
>04_04_0950 + 29609484-29611025
Length = 513
Score = 26.6 bits (56), Expect = 6.7
Identities = 15/43 (34%), Positives = 17/43 (39%)
Frame = -2
Query: 234 CFTIFRTSFPVKAYFRRFLRKITRGKHSRNLWGPVDGLGAYTP 106
CF +F V RR RK K + L GP G Y P
Sbjct: 468 CFLAVLVAFAVAWAVRRRQRKAAAEKPADGLLGPTKGSALYDP 510
>03_06_0588 - 34924061-34924644,34924662-34925058
Length = 326
Score = 26.6 bits (56), Expect = 6.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 165 RGKHSRNLWGPVDGLGAYTPPS 100
R H+RNLWG ++G+ P S
Sbjct: 148 RCHHARNLWGAMEGIYQLPPDS 169
>01_01_0001 +
2449-2616,3357-3455,4457-4560,6136-6944,7028-7150,
7232-7320,7408-7608,8210-8311,9104-9187,9232-9244,
9504-9562
Length = 616
Score = 26.6 bits (56), Expect = 6.7
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 140 HKLRECL-PLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTY 280
H CL PL++ +RN L + + +LKI +R +++ K+R Y
Sbjct: 545 HLEENCLEPLLVDMRNDLSCEMFNDNMLKINVKRCVRMAIKLRKKYIY 592
>12_02_0566 - 20531659-20531696,20533101-20534094
Length = 343
Score = 26.2 bits (55), Expect = 8.9
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = -3
Query: 143 CGDRLTVSVHTHRQVCPTSMLWERLSASNAS*GLAPCWTSIKS 15
C D+ V TH+ V P S W+ AS G W S
Sbjct: 112 CTDQERVGFATHQLVGPASEWWDNYEASQPE-GHTTTWNEFSS 153
>09_03_0029 +
11724581-11724583,11726413-11726610,11726874-11727038,
11727217-11727283,11727645-11727812,11728070-11728194,
11728288-11728446,11728552-11728714,11728795-11728920,
11729000-11729083,11729161-11729528,11729613-11729813,
11729909-11730018,11730113-11730197,11730360-11730488,
11730580-11730667,11730805-11730893,11730968-11731267
Length = 875
Score = 26.2 bits (55), Expect = 8.9
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 314 KTNELFRLIYDVKGRFTIH 370
K E+FR + D K RFT+H
Sbjct: 830 KIAEVFRAVEDAKKRFTVH 848
>02_05_0605 + 30300977-30301912
Length = 311
Score = 26.2 bits (55), Expect = 8.9
Identities = 14/46 (30%), Positives = 18/46 (39%)
Frame = -3
Query: 239 GVVSQFSGLRFRSKHTSDDSSGKSPGASTRATCGDRLTVSVHTHRQ 102
G S F GL FR + D PG C D L + H++
Sbjct: 74 GAASAFFGLGFREEDDHDGGEWAPPGEVELPLCWDCLQLEEPDHQR 119
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,964,305
Number of Sequences: 37544
Number of extensions: 219041
Number of successful extensions: 745
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 745
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -