Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_M21
         (307 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    28   0.36 
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    25   1.9  
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    24   4.4  
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma...    24   5.8  
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    24   5.8  
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    23   7.7  

>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 27.9 bits (59), Expect = 0.36
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 21  RRRNSWKLSVNIIIGFLINKP*TLYV*GEYTTRTMSS 131
           + +N  KLSVN+I  F I+ P ++      T RT S+
Sbjct: 495 KEKNEQKLSVNLISSFRISDPESIRFYSSTTARTRSA 531


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 106 SPQTYKVHGLLIKNPIIMLTDNFQEFRRL 20
           S Q + +    I+NP+ +L + F EFR L
Sbjct: 578 SNQVFTLLSNFIQNPLFVLDECFDEFRNL 606


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -3

Query: 179 FVSIRRHLNSSYCRHLRRH 123
           F+S+R + N  Y  H RRH
Sbjct: 796 FLSVRLNYNEFYVSHRRRH 814


>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 535

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 239 TVVAFILINLLFHYFE*LTVFVSI 168
           T V  +LI ++ H F  L +F+SI
Sbjct: 49  TSVGLLLITIICHLFLLLNIFISI 72


>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 308

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 134 DVYNKNYSNVDEWRQKL 184
           DV+NK      EW+QKL
Sbjct: 285 DVHNKRLDAWSEWKQKL 301


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 22  GDGTPGSCQLTLLLDF*LTNRELCTFE 102
           G G+PGS  + +L  F   N  L T E
Sbjct: 53  GSGSPGSVSMQVLSLFSAVNSALATLE 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 866,975
Number of Sequences: 5004
Number of extensions: 12239
Number of successful extensions: 31
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)