Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_M21
         (307 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   0.64 
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   2.0  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   3.4  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   4.5  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   4.5  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   4.5  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   4.5  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    20   6.0  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    20   7.9  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    20   7.9  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.4 bits (48), Expect = 0.64
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 107 IHNKNDVF*DVYNKNYSN 160
           IHN N+   + YN NY+N
Sbjct: 323 IHNNNNYNNNNYNNNYNN 340


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = +3

Query: 111 TTRTMSSKMSTIRTIQMSTNGDKNCK 188
           +T   S+ ++    +  +T GDK+C+
Sbjct: 124 STAASSAALAAAAAVDAATAGDKSCR 149


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 101 R*IHNKNDVF*DVYNKNYSN 160
           R IHN N+   +  N NY+N
Sbjct: 88  RTIHNNNNYKYNYNNNNYNN 107


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 107 IHNKNDVF*DVYNKNYSN 160
           IHN N+   +  N NY+N
Sbjct: 90  IHNNNNYKYNYNNNNYNN 107


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 107 IHNKNDVF*DVYNKNYSN 160
           IHN N+   +  N NY+N
Sbjct: 90  IHNNNNYKYNYNNNNYNN 107


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 107 IHNKNDVF*DVYNKNYSN 160
           IHN N+   +  N NY+N
Sbjct: 90  IHNNNNYKYNYNNNNYNN 107


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 107 IHNKNDVF*DVYNKNYSN 160
           IHN N+   +  N NY+N
Sbjct: 323 IHNNNNYKYNYNNNNYNN 340


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = +2

Query: 134 DVYNKNYSNVDEWRQKL*AIQ 196
           D YN N  +  +W  K+ A++
Sbjct: 372 DEYNNNDLDTKKWNNKISALR 392


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 110 HNKNDVF*DVYNKNYSN 160
           +N N+ + + YN NY+N
Sbjct: 95  NNYNNNYNNNYNNNYNN 111


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 110 HNKNDVF*DVYNKNYSN 160
           +N N+ + + YN NY+N
Sbjct: 95  NNYNNNYNNNYNNNYNN 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,034
Number of Sequences: 438
Number of extensions: 1061
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6493812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)