Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_M19
         (520 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.06c |rpl44|rpl28|60S ribosomal protein L28/L44|Schizosa...    66   3e-12
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    29   0.32 
SPAC1142.06 |get3||GET complex ATPase subunit Get3 |Schizosaccha...    26   3.9  
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    25   5.1  
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po...    25   6.8  
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    25   9.0  

>SPAC1687.06c |rpl44|rpl28|60S ribosomal protein
           L28/L44|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 134

 Score = 66.1 bits (154), Expect = 3e-12
 Identities = 43/103 (41%), Positives = 58/103 (56%), Gaps = 2/103 (1%)
 Frame = +2

Query: 149 FSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNLIRRPFKA 328
           F++EP NV+  ++ R++GL + KAVGV  N  R    +     K  +KPAK L R+   A
Sbjct: 30  FNREPVNVSGKNAQRFSGLCNDKAVGVQANSPRGVVLITKTNPKNAQKPAK-LFRKDVIA 88

Query: 329 GA-RRSLYK-VKRLLKANHYRTDLCKATLRRASAILRSQRPIK 451
            A  R  YK +   +    YR DL K ++ RASAIL SQRP K
Sbjct: 89  NASSRKTYKSIAGRIGRTGYRDDLVKVSVARASAILSSQRPKK 131



 Score = 27.1 bits (57), Expect = 1.7
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +1

Query: 64  VKMSSSLNWMIIRNNNAFLXEEAQY 138
           + +S+ L W +IR+NN FL +  ++
Sbjct: 1   MSVSNDLIWQVIRDNNRFLVKRPEF 25


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 29.5 bits (63), Expect = 0.32
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = -1

Query: 268 VHYCESLPVRVLHDTNSFLVNQAVVPEGVEVSHIVRLLAERLFD 137
           +HYC S  +  LHDT   LV       G + S +++     + D
Sbjct: 251 IHYCSSSSLSYLHDTERALVGSLTDSYGFKKSGLIKKTISLMID 294


>SPAC1142.06 |get3||GET complex ATPase subunit Get3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 43  PNTTCSQCVRRXK 5
           PNTTC QC+ R K
Sbjct: 264 PNTTCPQCMARRK 276


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -2

Query: 225 PTAFL*IKPLYLKEWRLVTLFGSLL--NGFLILRFFXKECIVVADDH 91
           PT+F  IKPL  + +R+  L+  LL  +   +L     E +V+  DH
Sbjct: 347 PTSFGKIKPLGFERFRICELYAELLHCSNMSLLSDPNGEAMVMQRDH 393


>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 330

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 208 SQESCWCRGEP*QEGIHSSVQESKGY 285
           S +S W   +P  + IHSSVQE++G+
Sbjct: 2   SNKSAW---QPQFDEIHSSVQEAEGF 24


>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +2

Query: 74  RRH*TG*SSATTMHSLXKKRNIKKPFSKEPNNVTNLHSFRYNGLIHKKA 220
           RRH     +++ + S  K+   K+P    P  +  L    + G  H+KA
Sbjct: 277 RRHKRSRHNSSNLASTPKRNGYKQPLQITPLPIRMLSLEEFQGSPHRKA 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,047,579
Number of Sequences: 5004
Number of extensions: 38582
Number of successful extensions: 108
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)