Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_M19
         (520 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869     70   1e-12
02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116     69   2e-12
05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650     68   4e-12
05_05_0075 + 22209322-22210041,22210323-22210391,22210775-222111...    35   0.045
01_04_0020 + 15142402-15143421                                         28   5.2  
07_03_1758 + 29269634-29270638                                         27   6.8  
05_04_0210 + 19082778-19082940,19083806-19083875,19084172-190842...    27   6.8  

>01_06_0431 + 29308635-29308782,29308882-29309048,29309747-29309869
          Length = 145

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 43/116 (37%), Positives = 61/116 (52%), Gaps = 2/116 (1%)
 Frame = +2

Query: 134 NIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATR--KPAKNL 307
           N K  FSKEPNN+ N+HS++++GL +KK V  V+    K   VV    K  +  KPA   
Sbjct: 28  NAKVQFSKEPNNLYNVHSYKHSGLANKKTV-TVQPASGKETAVVLSTTKTEKQNKPASLY 86

Query: 308 IRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQRPIKAKKAKDSR 475
            +   +   R+    VK  +  N+YR DL K  L R SA+ RS +  K+   K +R
Sbjct: 87  HKSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSAVYRSLQVAKSGVKKKNR 142


>02_05_1254 - 35275050-35275178,35275701-35275867,35275969-35276116
          Length = 147

 Score = 68.9 bits (161), Expect = 2e-12
 Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 1/115 (0%)
 Frame = +2

Query: 134 NIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVV-YKKAKATRKPAKNLI 310
           N K  F+KEPNN+ N+HS++++GL +KK V +  +  +    V+   K K    PAK   
Sbjct: 28  NAKVQFTKEPNNLYNVHSYKHSGLANKKTVTIQPSGGKDAAVVLSTTKTKKQNAPAKLYH 87

Query: 311 RRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQRPIKAKKAKDSR 475
           +   +   R+    VK  +  N+YR DL K  L R S++ RS +  K+   K +R
Sbjct: 88  KSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVYRSLQVAKSGVKKKNR 142


>05_06_0252 - 26695467-26695595,26697233-26697399,26697503-26697650
          Length = 147

 Score = 68.1 bits (159), Expect = 4e-12
 Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 1/115 (0%)
 Frame = +2

Query: 134 NIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVV-YKKAKATRKPAKNLI 310
           N K  F+KEPNN+ N+HS++++GL +KK V +  +  +    V+   K K    PAK   
Sbjct: 28  NAKVQFTKEPNNLYNVHSYKHSGLANKKTVTIQPSGVKDAAVVLSTTKTKKQNAPAKLYH 87

Query: 311 RRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQRPIKAKKAKDSR 475
           +   +   R+    VK  +  N+YR DL K  L R S++ RS +  K+   K +R
Sbjct: 88  KSVMRKEFRKMAKAVKNQVSDNYYRPDLTKPALARLSSVYRSLQVSKSGAKKKNR 142


>05_05_0075 +
           22209322-22210041,22210323-22210391,22210775-22211145,
           22212291-22212351,22212496-22213086
          Length = 603

 Score = 34.7 bits (76), Expect = 0.045
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +2

Query: 95  SSATTMHSLXKKRNIKKPFSKEPNNVTNLHSFRYNGLI--HKKAVGVVENPDRKG 253
           SS T  HS+   R+I+   S+ P++++   SF YNGL   H  A+     PD  G
Sbjct: 473 SSMTRNHSISASRHIEDGLSQMPHDISGQVSFAYNGLAAHHSIAMAHHHQPDLIG 527


>01_04_0020 + 15142402-15143421
          Length = 339

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 17/61 (27%), Positives = 25/61 (40%)
 Frame = +2

Query: 290 KPAKNLIRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQRPIKAKKAKD 469
           +PA   +RRP  A A  +LY   R     H   +  +A    A++    Q       A+D
Sbjct: 155 RPASYQVRRPMSARAHGTLYFCYRFTDVKHPALEAIEAATATATSSATKQGQYVPMYAQD 214

Query: 470 S 472
           S
Sbjct: 215 S 215


>07_03_1758 + 29269634-29270638
          Length = 334

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 356 KRLLKANHYRTDLCKATLRRASAILRSQRPIKAKKA 463
           + L  A+ +  D+C    RRAS ++R+ R + A+ A
Sbjct: 152 RHLPAASFHNYDICADANRRASRLVRADRDLSARMA 187


>05_04_0210 +
           19082778-19082940,19083806-19083875,19084172-19084295,
           19084442-19084897
          Length = 270

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 443 ASGSGGWLKHDEG*PCISLCGSG*P 369
           A GSGGW +  +G    + CG+G P
Sbjct: 28  AEGSGGWRRRRDGHVARARCGAGEP 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,807,134
Number of Sequences: 37544
Number of extensions: 286042
Number of successful extensions: 598
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)