Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_M19
(520 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR457024-1|CAG33305.1| 137|Homo sapiens RPL28 protein. 110 2e-24
BC011582-1|AAH11582.1| 137|Homo sapiens ribosomal protein L28 p... 110 2e-24
BC010182-1|AAH10182.1| 137|Homo sapiens ribosomal protein L28 p... 110 2e-24
BC010173-1|AAH10173.1| 137|Homo sapiens ribosomal protein L28 p... 110 2e-24
U14969-1|AAA85657.1| 137|Homo sapiens ribosomal protein L28 pro... 109 6e-24
AB209627-1|BAD92864.1| 95|Homo sapiens ribosomal protein L28 v... 56 6e-08
AB007179-1|BAA25838.1| 53|Homo sapiens ribosomal protein L28 p... 50 5e-06
Z26634-1|CAB42644.1| 3925|Homo sapiens ankyrin B (440 kDa) protein. 30 5.6
X56958-1|CAA40279.2| 1872|Homo sapiens ankyrin (brank-2) protein. 30 5.6
>CR457024-1|CAG33305.1| 137|Homo sapiens RPL28 protein.
Length = 137
Score = 110 bits (265), Expect = 2e-24
Identities = 54/113 (47%), Positives = 73/113 (64%)
Frame = +2
Query: 128 KRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNL 307
KRN K+ +S EPNN+ +SFRYNGLIH+K VGV D KG VV K+ RKPA +
Sbjct: 19 KRN-KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSY 77
Query: 308 IRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQRPIKAKKAK 466
+R AR +L ++ +++ N YR DL A +RRASAILRSQ+P+ K+ +
Sbjct: 78 VRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPVMVKRKR 130
>BC011582-1|AAH11582.1| 137|Homo sapiens ribosomal protein L28
protein.
Length = 137
Score = 110 bits (265), Expect = 2e-24
Identities = 54/113 (47%), Positives = 73/113 (64%)
Frame = +2
Query: 128 KRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNL 307
KRN K+ +S EPNN+ +SFRYNGLIH+K VGV D KG VV K+ RKPA +
Sbjct: 19 KRN-KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSY 77
Query: 308 IRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQRPIKAKKAK 466
+R AR +L ++ +++ N YR DL A +RRASAILRSQ+P+ K+ +
Sbjct: 78 VRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPVMVKRKR 130
>BC010182-1|AAH10182.1| 137|Homo sapiens ribosomal protein L28
protein.
Length = 137
Score = 110 bits (265), Expect = 2e-24
Identities = 54/113 (47%), Positives = 73/113 (64%)
Frame = +2
Query: 128 KRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNL 307
KRN K+ +S EPNN+ +SFRYNGLIH+K VGV D KG VV K+ RKPA +
Sbjct: 19 KRN-KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSY 77
Query: 308 IRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQRPIKAKKAK 466
+R AR +L ++ +++ N YR DL A +RRASAILRSQ+P+ K+ +
Sbjct: 78 VRTTINRNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPVMVKRKR 130
>BC010173-1|AAH10173.1| 137|Homo sapiens ribosomal protein L28
protein.
Length = 137
Score = 110 bits (265), Expect = 2e-24
Identities = 54/113 (47%), Positives = 73/113 (64%)
Frame = +2
Query: 128 KRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNL 307
KRN K+ +S EPNN+ +SFRYNGLIH+K VGV D KG VV K+ RKPA +
Sbjct: 19 KRN-KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSY 77
Query: 308 IRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQRPIKAKKAK 466
+R AR +L ++ +++ N YR DL A +RRASAILRSQ+P+ K+ +
Sbjct: 78 VRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPVMVKRKR 130
>U14969-1|AAA85657.1| 137|Homo sapiens ribosomal protein L28
protein.
Length = 137
Score = 109 bits (262), Expect = 6e-24
Identities = 53/113 (46%), Positives = 73/113 (64%)
Frame = +2
Query: 128 KRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKKAKATRKPAKNL 307
KRN K+ +S EPNN+ +SFRYNGLIH+K VGV D KG VV K+ RKPA +
Sbjct: 19 KRN-KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSY 77
Query: 308 IRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQRPIKAKKAK 466
+R AR +L ++ +++ N YR DL A +RRASAILR+Q+P+ K+ +
Sbjct: 78 VRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRTQKPVMVKRKR 130
>AB209627-1|BAD92864.1| 95|Homo sapiens ribosomal protein L28
variant protein.
Length = 95
Score = 56.4 bits (130), Expect = 6e-08
Identities = 28/49 (57%), Positives = 34/49 (69%)
Frame = +2
Query: 128 KRNIKKPFSKEPNNVTNLHSFRYNGLIHKKAVGVVENPDRKGFTVVYKK 274
KRN K+ +S EPNN+ +SFRYNGLIH+K VGV D KG VV K+
Sbjct: 27 KRN-KQTYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKR 74
>AB007179-1|BAA25838.1| 53|Homo sapiens ribosomal protein L28
protein.
Length = 53
Score = 50.0 bits (114), Expect = 5e-06
Identities = 22/50 (44%), Positives = 32/50 (64%)
Frame = +2
Query: 308 IRRPFKAGARRSLYKVKRLLKANHYRTDLCKATLRRASAILRSQRPIKAK 457
+R AR +L ++ +++ N YR DL A +RRASAILRSQ+P+ K
Sbjct: 4 VRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQKPVMVK 53
>Z26634-1|CAB42644.1| 3925|Homo sapiens ankyrin B (440 kDa) protein.
Length = 3925
Score = 29.9 bits (64), Expect = 5.6
Identities = 16/68 (23%), Positives = 33/68 (48%)
Frame = +1
Query: 61 TVKMSSSLNWMIIRNNNAFLXEEAQYQKAVQQGAEQCD*PPLLQVQRLDSQESCWCRGEP 240
T+ + S + +++ + + ++AV + +E CD PP++ + + S + G P
Sbjct: 3670 TITLDHSEGFSVLQEELCTAQHKQKEEQAVSKESETCDHPPIVSEEDISVGYSTFQDGVP 3729
Query: 241 *QEGIHSS 264
EG SS
Sbjct: 3730 KTEGDSSS 3737
>X56958-1|CAA40279.2| 1872|Homo sapiens ankyrin (brank-2) protein.
Length = 1872
Score = 29.9 bits (64), Expect = 5.6
Identities = 16/68 (23%), Positives = 33/68 (48%)
Frame = +1
Query: 61 TVKMSSSLNWMIIRNNNAFLXEEAQYQKAVQQGAEQCD*PPLLQVQRLDSQESCWCRGEP 240
T+ + S + +++ + + ++AV + +E CD PP++ + + S + G P
Sbjct: 1585 TITLDHSEGFSVLQEELCTAQHKQKEEQAVSKESETCDHPPIVSEEDISVGYSTFQDGVP 1644
Query: 241 *QEGIHSS 264
EG SS
Sbjct: 1645 KTEGDSSS 1652
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,334,803
Number of Sequences: 237096
Number of extensions: 1584825
Number of successful extensions: 9619
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9619
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4933413474
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -