Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_M07
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41015-2|AAA82311.1|  491|Caenorhabditis elegans Vacuolar h atpa...   305   2e-83
AC006708-2|AAF60418.1|  501|Caenorhabditis elegans Temporarily a...   276   9e-75
U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase su...    64   1e-10
AL023815-4|CAF31480.1|  511|Caenorhabditis elegans Hypothetical ...    49   3e-06
AL023815-1|CAA19429.1|  538|Caenorhabditis elegans Hypothetical ...    49   3e-06
AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical ...    45   5e-05
AL023815-3|CAD92384.1|  503|Caenorhabditis elegans Hypothetical ...    30   1.2  
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ...    29   2.9  
AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ...    28   5.0  
AL031635-6|CAA21044.1|  761|Caenorhabditis elegans Hypothetical ...    28   6.7  
Z50740-1|CAA90607.1| 1089|Caenorhabditis elegans Hypothetical pr...    27   8.8  
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    27   8.8  
U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical pr...    27   8.8  
AL132860-26|CAB60511.2|  700|Caenorhabditis elegans Hypothetical...    27   8.8  
AF016682-2|AAO38604.1|  891|Caenorhabditis elegans Argonaute (pl...    27   8.8  
AF016682-1|AAB66187.2|  910|Caenorhabditis elegans Argonaute (pl...    27   8.8  

>U41015-2|AAA82311.1|  491|Caenorhabditis elegans Vacuolar h atpase
           protein 12 protein.
          Length = 491

 Score =  305 bits (748), Expect = 2e-83
 Identities = 142/164 (86%), Positives = 156/164 (95%)
 Frame = +2

Query: 158 SQPRLTYKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEVSGSKAVVQVFE 337
           + PRL Y+TV GVNGPLVIL++VKFP+FSEIV++ L DG+ RSGQVLE+S +KAVVQVFE
Sbjct: 23  TNPRLIYQTVCGVNGPLVILNDVKFPQFSEIVKITLPDGSKRSGQVLEISKNKAVVQVFE 82

Query: 338 GTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDFLDIQGQPINP 517
           GTSGIDAKNT+CEFTGDILRTPVSEDMLGR+FNGSGKPIDKGPP+LAEDFLDI GQPINP
Sbjct: 83  GTSGIDAKNTICEFTGDILRTPVSEDMLGRIFNGSGKPIDKGPPVLAEDFLDINGQPINP 142

Query: 518 WSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAA 649
           WSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSA+GLPHNEIAA
Sbjct: 143 WSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSASGLPHNEIAA 186


>AC006708-2|AAF60418.1|  501|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 300 protein.
          Length = 501

 Score =  276 bits (677), Expect = 9e-75
 Identities = 129/166 (77%), Positives = 149/166 (89%)
 Frame = +2

Query: 152 FISQPRLTYKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEVSGSKAVVQV 331
           + ++P+LTY+TV GVNGPLVI+  VKFP F+EIV++ L +G +R GQVLE S +KAVVQV
Sbjct: 33  YSTKPKLTYQTVFGVNGPLVIVHNVKFPMFNEIVKITLPNGQIRMGQVLESSKNKAVVQV 92

Query: 332 FEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDKGPPILAEDFLDIQGQPI 511
           FEGT+G+DAK T CEFTGDI R+PVS DMLGR+FNGSGKPIDKGPP+L ED+LDI GQPI
Sbjct: 93  FEGTTGVDAKFTTCEFTGDIFRSPVSLDMLGRIFNGSGKPIDKGPPVLPEDYLDINGQPI 152

Query: 512 NPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAA 649
           NP++RIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAA
Sbjct: 153 NPFNRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGLPHNEIAA 198


>U10402-2|AAA19068.2|  538|Caenorhabditis elegans Atp synthase
           subunit protein 2 protein.
          Length = 538

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 4/116 (3%)
 Frame = +2

Query: 293 VLEVS---GSKAVVQV-FEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPIDK 460
           +LEVS   G   V  +  +GT G+     + + TGD ++ PV  + LGR+ N  G+PID+
Sbjct: 105 ILEVSQHLGDNVVRCIAMDGTEGLVRGQPVAD-TGDPIKIPVGPETLGRIMNVIGEPIDE 163

Query: 461 GPPILAEDFLDIQGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQKIPIFSAAGL 628
             PI +++F  I  +          +E++ TGI  +D++   A+G KI +F  AG+
Sbjct: 164 RGPIASKNFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAGV 219


>AL023815-4|CAF31480.1|  511|Caenorhabditis elegans Hypothetical
           protein H28O16.1d protein.
          Length = 511

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
 Frame = +2

Query: 287 GQVLEVSGSKAVVQVFEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPID-KG 463
           G  + +      V VF G   +  +  + + TG I+  PV + +LGRV +  G PID KG
Sbjct: 62  GMAMNLDVDNVGVVVF-GNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKG 120

Query: 464 PPILA-EDFLDIQGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQK 601
           P   A    ++++   I P  R+   E + TG+ A+D +  I RGQ+
Sbjct: 121 PIANARRSRVEVKAPGIIP--RLSVREPMVTGVKAVDSLVPIGRGQR 165


>AL023815-1|CAA19429.1|  538|Caenorhabditis elegans Hypothetical
           protein H28O16.1a protein.
          Length = 538

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
 Frame = +2

Query: 287 GQVLEVSGSKAVVQVFEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPID-KG 463
           G  + +      V VF G   +  +  + + TG I+  PV + +LGRV +  G PID KG
Sbjct: 89  GMAMNLDVDNVGVVVF-GNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPIDGKG 147

Query: 464 PPILA-EDFLDIQGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQK 601
           P   A    ++++   I P  R+   E + TG+ A+D +  I RGQ+
Sbjct: 148 PIANARRSRVEVKAPGIIP--RLSVREPMVTGVKAVDSLVPIGRGQR 192


>AL033512-1|CAA22076.1|  606|Caenorhabditis elegans Hypothetical
           protein Y49A3A.2 protein.
          Length = 606

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 25/94 (26%), Positives = 51/94 (54%)
 Frame = +2

Query: 173 TYKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQVLEVSGSKAVVQVFEGTSGI 352
           +Y  V GV+GP+V  +++      E+V++   +     G+++ + G  A +QV+E TSG+
Sbjct: 6   SYGFVYGVSGPVVTAEKMAGSAMYELVRVGHQELV---GEIIRLEGDYATIQVYEETSGV 62

Query: 353 DAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPI 454
              + +   TG  L   +   ++G +F+G  +P+
Sbjct: 63  TIGDPVLR-TGKPLSVELGPGIMGSIFDGIQRPL 95


>AL023815-3|CAD92384.1|  503|Caenorhabditis elegans Hypothetical
           protein H28O16.1c protein.
          Length = 503

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 2/108 (1%)
 Frame = +2

Query: 284 SGQVLEVSGSKAVVQVFEGTSGIDAKNTLCEFTGDILRTPVSEDMLGRVFNGSGKPID-K 460
           +G+VL +     + +V+ G   I A+  + EF   I    ++ D+        G PID K
Sbjct: 56  TGKVLSIGDG--IARVY-GLKNIQAEE-MVEFDSGIKGMAMNLDVDNVGVVVLGNPIDGK 111

Query: 461 GPPILAE-DFLDIQGQPINPWSRIYPEEMIQTGISAIDVMNSIARGQK 601
           GP   A    ++++   I P  R+   E + TG+ A+D +  I RGQ+
Sbjct: 112 GPIANARRSRVEVKAPGIIP--RLSVREPMVTGVKAVDSLVPIGRGQR 157


>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
            protein H43E16.1 protein.
          Length = 1203

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/89 (21%), Positives = 39/89 (43%)
 Frame = -3

Query: 483  SSAKIGGPLSMGLPEPLNTRPNMSSETGVRRMSPVNSQSVFFASIPDVPSNTWTTALEPL 304
            SS+ +G       P+P  +  ++ S TG          S   ++   +PS+T T      
Sbjct: 743  SSSTMGSTAGSSSPQPTASSTSVPSSTGATSSGSTVGSSTMGSTQSSLPSSTMTNT--GS 800

Query: 303  TSST*PERRVPSASFSCTISENLGNLTSS 217
            T ST   +   S+++  + +E + + T++
Sbjct: 801  TGSTVTNQLASSSTYGASSTEPIASSTAN 829


>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
            protein Y53C10A.10 protein.
          Length = 1582

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -3

Query: 336  SNTWTTALEPLTSST*PERRVPSASFSCTISENLGNLTSS--KMTRGPFTP 190
            S+T +T  E  TSST P      ++ + T+S      TSS    TRG F P
Sbjct: 877  SSTGSTTSESTTSSTEPPTTQEESNTTTTLSSTTPFTTSSTESFTRGGFIP 927


>AL031635-6|CAA21044.1|  761|Caenorhabditis elegans Hypothetical
           protein Y47D3B.9 protein.
          Length = 761

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = +2

Query: 218 DEVKFPKFSEIVQLKLADGTLRSGQVLEVSGSKAVVQVFEGTSGIDAKNTL 370
           D+  F +FSE +          S  V++ S SK     FEG+SG DA +T+
Sbjct: 231 DDGIFNRFSEKLAKMARRKQQESTLVIDPSHSKDDSAFFEGSSGSDAPSTI 281


>Z50740-1|CAA90607.1| 1089|Caenorhabditis elegans Hypothetical
           protein F31B12.2 protein.
          Length = 1089

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
 Frame = +2

Query: 113 RRPRNMSWQSPGYFISQPRLTYKTVSGVNGPLVILDEVKFPKFSEIVQLKLADGTLRSGQ 292
           RRP  +S    GYF++ P L+   VS    PL++  ++   + S   +  L   + R+  
Sbjct: 730 RRPSALSQFEFGYFVNSPELSGSEVSDC-APLLLSGQIGGSRKSS-DETSLGGWSSRASS 787

Query: 293 VLEVSGSKAVV----QVFEGTSGIDAKNT 367
           V+    S++ V      F G + I + N+
Sbjct: 788 VMSQRSSRSSVGLRLSTFSGGTSIASDNS 816


>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
            K06A9.1b protein.
          Length = 2232

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 22/77 (28%), Positives = 33/77 (42%)
 Frame = -3

Query: 432  NTRPNMSSETGVRRMSPVNSQSVFFASIPDVPSNTWTTALEPLTSST*PERRVPSASFSC 253
            +T+P MS+  G    S V S +    S   VPS+T T      TSS      +  +S + 
Sbjct: 1890 STQPQMSTSQGSSAGSTVASSTAGLVSTSTVPSSTGTMG---STSSGTVGSTISESSTAA 1946

Query: 252  TISENLGNLTSSKMTRG 202
            + S   G+  +   T G
Sbjct: 1947 STSSQTGSTVTIGSTSG 1963


>U53341-1|AAC69110.3|  727|Caenorhabditis elegans Hypothetical
           protein F49E10.5 protein.
          Length = 727

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/32 (50%), Positives = 21/32 (65%)
 Frame = +3

Query: 441 PANPSTRVPQSWPKTSWTSRVSPSTHGHVSTQ 536
           PAN S+R   S P T+ +S VSP  +GHV T+
Sbjct: 594 PANRSSRSSPS-PHTNKSS-VSPGNNGHVKTE 623


>AL132860-26|CAB60511.2|  700|Caenorhabditis elegans Hypothetical
           protein Y56A3A.32 protein.
          Length = 700

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +1

Query: 439 FRQTHRQGSPNLGRRLLGHPGSAHQPMVTYLPRGDDSNW 555
           FRQ     S  + R  LG  G  H+P   Y+P+    +W
Sbjct: 15  FRQQTAVRSIAMSRVALGGGGHHHEPTPVYIPKPGSLDW 53


>AF016682-2|AAO38604.1|  891|Caenorhabditis elegans Argonaute
           (plant)-like gene protein2, isoform b protein.
          Length = 891

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 442 GTVEYTAQHVFRDRCTKNVTRELAECVL 359
           G+V++    VF D+C + V RE+  C++
Sbjct: 72  GSVQHYQIDVFPDKCPRRVNREVIGCLI 99


>AF016682-1|AAB66187.2|  910|Caenorhabditis elegans Argonaute
           (plant)-like gene protein2, isoform a protein.
          Length = 910

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 442 GTVEYTAQHVFRDRCTKNVTRELAECVL 359
           G+V++    VF D+C + V RE+  C++
Sbjct: 91  GSVQHYQIDVFPDKCPRRVNREVIGCLI 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,042,826
Number of Sequences: 27780
Number of extensions: 382728
Number of successful extensions: 1189
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)