Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_M04
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein L19B|Schizosa... 181 9e-47
SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein L19|Schizosac... 181 9e-47
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 29 0.59
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 28 1.4
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 26 5.5
SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces... 25 7.2
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ... 25 9.5
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 25 9.5
SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||... 25 9.5
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 25 9.5
>SPCC1682.14 |rpl1902|rpl19-2|60S ribosomal protein
L19B|Schizosaccharomyces pombe|chr 3|||Manual
Length = 193
Score = 181 bits (440), Expect = 9e-47
Identities = 81/142 (57%), Positives = 105/142 (73%)
Frame = -2
Query: 652 CGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHC 473
CGK+KVW+DPNEI+EI+N NSRQNIRK++KDGLVI+KP +HSR R+RK A+R GRH
Sbjct: 17 CGKRKVWMDPNEISEISNANSRQNIRKLVKDGLVIRKPNLMHSRFRIRKTHAAKRLGRHT 76
Query: 472 GFGKRRGTANARMPQKELWXXXXXXXXXXXXXXRTAKKIDRHXYHSLYMKAKGNVFKNKR 293
G+GKR+GTA ARMP +W R + KID+H YH+LY++AKGN FK+KR
Sbjct: 77 GYGKRKGTAEARMPSTVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKR 136
Query: 292 VLMEYIHRKKAEKARTKMLSDQ 227
L+E+I R KAE RTK++ +Q
Sbjct: 137 ALIEHIQRAKAEANRTKLIQEQ 158
>SPBC56F2.02 |rpl1901|rpl19-1|60S ribosomal protein
L19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 193
Score = 181 bits (440), Expect = 9e-47
Identities = 81/142 (57%), Positives = 105/142 (73%)
Frame = -2
Query: 652 CGKKKVWLDPNEINEIANTNSRQNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHC 473
CGK+KVW+DPNEI+EI+N NSRQN+RK+IKDGLVI+KP +HSR R+RK A+R GRH
Sbjct: 17 CGKRKVWMDPNEISEISNANSRQNVRKLIKDGLVIRKPNLMHSRFRIRKTHAAKRLGRHT 76
Query: 472 GFGKRRGTANARMPQKELWXXXXXXXXXXXXXXRTAKKIDRHXYHSLYMKAKGNVFKNKR 293
G+GKR+GTA ARMP +W R + KID+H YH+LY++AKGN FK+KR
Sbjct: 77 GYGKRKGTAEARMPSAVVWMRRQRVLRRLLRKYRESGKIDKHLYHTLYLEAKGNTFKHKR 136
Query: 292 VLMEYIHRKKAEKARTKMLSDQ 227
L+E+I R KAE RTK++ +Q
Sbjct: 137 ALIEHIQRAKAEANRTKLIQEQ 158
>SPBC12C2.02c |ste20|ste16|sterility protein
Ste20|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1309
Score = 29.1 bits (62), Expect = 0.59
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +2
Query: 557 TILDHLTDVLSGVGVCDLIDFIWIQPHLLF 646
+I +H++DV G+ V LI+ + I+P +LF
Sbjct: 351 SICEHVSDVSRGIAVETLIELMIIRPKILF 380
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 27.9 bits (59), Expect = 1.4
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = -3
Query: 522 ALVSAKTQKHVERVVTVALVREEVQPMRVCHRR 424
++V K K E+++ AL RE V+P R H++
Sbjct: 652 SVVEVKDAKAAEKILRYALFREVVKPKRKKHKK 684
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +3
Query: 261 AFFLWMYSMSTRLFLNTLPFAFM-XSEWYXCL 353
AF LW+YS+ L+L + W+ CL
Sbjct: 337 AFVLWVYSLDKELWLQLDMLGVLNHGSWFKCL 368
>SPCC1919.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 282
Score = 25.4 bits (53), Expect = 7.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 122 FVFSSEGLQQFLLLGGNTFLAALACLLHFIAA 217
+V E +FLLLG F A + LLH +++
Sbjct: 50 YVLPFEKNNRFLLLGEGNFSFAFSLLLHHVSS 81
>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
Frame = -2
Query: 640 KVWLDPNEINEIANTNSRQNIRKMIKDGLVIKK-----------PVAVHSRARVRKNTEA 494
K WLDP ++++ T + +++++ I ++K+ P + A KN EA
Sbjct: 289 KSWLDPVVVSKVKFTRNYRDLQQYINPDNILKEFGGPNPWRYTYPEPCQNEAEALKNVEA 348
Query: 493 RRKGR 479
R+ R
Sbjct: 349 RKSLR 353
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = -2
Query: 586 QNIRKMIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 470
+++R +KD + +PV+V S A ++T G G
Sbjct: 141 ESLRSKLKDAMASTEPVSVDSAAAPSQSTNPEGNGGSVG 179
>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 376 TSGAIFLKPFVFVPIVPSVAYAHWLYLFSYQSHS 477
+SG + LKP + P + W+ F +SHS
Sbjct: 193 SSGGLLLKPAGRIGSSPIPGHGFWIESFDNKSHS 226
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +1
Query: 445 WLYLFSYQSHSDDPFYVLLCFCGHERGS 528
W Y+S D FY ++ F H RGS
Sbjct: 824 WGETMVYESIISDDFYSMIRFLVHHRGS 851
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,285,261
Number of Sequences: 5004
Number of extensions: 43772
Number of successful extensions: 145
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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