Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_M02
(320 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0486 + 19577507-19577568,19578119-19578218,19581128-195812... 93 6e-20
11_06_0483 + 24118047-24118108,24118952-24119051,24119330-24119338 92 8e-20
03_06_0123 - 31821915-31822094,31822187-31822324,31822413-318228... 92 8e-20
06_02_0196 - 12898050-12898553,12898689-12900824 27 2.5
10_01_0345 - 3811057-3811236,3811342-3811615,3811732-3812289,381... 27 3.3
09_02_0557 + 10639845-10639900,10640372-10640647,10640998-10641283 27 3.3
07_01_0426 + 3239274-3239386,3239472-3239702,3242516-3242642,324... 27 3.3
12_02_1151 + 26488686-26488792,26488897-26489142,26490246-264903... 27 4.3
04_04_0910 - 29321128-29321276,29321977-29322508,29323301-293237... 26 7.6
04_03_1044 - 21965237-21965341,21966130-21966300,21966414-219665... 26 7.6
>12_02_0486 +
19577507-19577568,19578119-19578218,19581128-19581214,
19581852-19581914
Length = 103
Score = 92.7 bits (220), Expect = 6e-20
Identities = 38/55 (69%), Positives = 42/55 (76%)
Frame = +1
Query: 79 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKKL 243
MGH+N+W SHP+ YG GSR CR C N HGLIRKYGL CRQCFR A DIGF K+
Sbjct: 1 MGHSNVWNSHPKNYGPGSRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIKV 55
>11_06_0483 + 24118047-24118108,24118952-24119051,24119330-24119338
Length = 56
Score = 92.3 bits (219), Expect = 8e-20
Identities = 38/54 (70%), Positives = 41/54 (75%)
Frame = +1
Query: 79 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 240
MGH+N+W SHP+ YG GSR CR C N HGLIRKYGL CRQCFR A DIGF K
Sbjct: 1 MGHSNVWNSHPKNYGPGSRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIK 54
>03_06_0123 -
31821915-31822094,31822187-31822324,31822413-31822817,
31822897-31823212,31823305-31823543,31823800-31823903,
31823987-31824145,31824326-31824510,31825318-31825427,
31826900-31826947,31827047-31827241,31827354-31827422,
31829521-31829620,31829879-31829940
Length = 769
Score = 92.3 bits (219), Expect = 8e-20
Identities = 38/54 (70%), Positives = 41/54 (75%)
Frame = +1
Query: 79 MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 240
MGH+N+W SHP+ YG GSR CR C N HGLIRKYGL CRQCFR A DIGF K
Sbjct: 1 MGHSNVWNSHPKNYGPGSRVCRVCGNPHGLIRKYGLMCCRQCFRSNAKDIGFIK 54
>06_02_0196 - 12898050-12898553,12898689-12900824
Length = 879
Score = 27.5 bits (58), Expect = 2.5
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -2
Query: 148 RIGMTEILVRICEGENTKYLRGPF*EIKLFLAN--EQQIRYTFK 23
R+GM L R+C+ L G +IK+ L N E++IRY K
Sbjct: 101 RMGMAVALKRMCKMGTWSRLAGNLQDIKVNLKNAAERRIRYDLK 144
>10_01_0345 -
3811057-3811236,3811342-3811615,3811732-3812289,
3812602-3812747,3812930-3813097,3813896-3814003,
3814859-3815029,3816557-3816949,3817522-3817617,
3817715-3817774,3818600-3818744,3819296-3819520,
3820106-3820254
Length = 890
Score = 27.1 bits (57), Expect = 3.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 105 RIPNICVAHFKKLNCFSLTSNKLDT 31
R+P I V H K+ + NKLDT
Sbjct: 759 RLPEILVVHLKRFSYSRFMKNKLDT 783
>09_02_0557 + 10639845-10639900,10640372-10640647,10640998-10641283
Length = 205
Score = 27.1 bits (57), Expect = 3.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 105 RIPNICVAHFKKLNCFSLTSNKLDT 31
R+P + V H K+ + T NKL+T
Sbjct: 130 RLPEVLVIHLKRFSYTQFTRNKLET 154
>07_01_0426 +
3239274-3239386,3239472-3239702,3242516-3242642,
3242729-3242788,3242868-3242960,3243073-3243369,
3243450-3243761,3243857-3244114,3244227-3244375,
3244470-3245102,3245367-3245640,3245736-3245777,
3246332-3246586,3246700-3246711
Length = 951
Score = 27.1 bits (57), Expect = 3.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 105 RIPNICVAHFKKLNCFSLTSNKLDT 31
R+P + V H K+ + T NKL+T
Sbjct: 777 RLPEVLVIHLKRFSYTQFTRNKLET 801
>12_02_1151 +
26488686-26488792,26488897-26489142,26490246-26490381,
26490502-26490561,26490648-26490740,26491421-26491663,
26491828-26491968,26492312-26492482,26492813-26492899,
26492954-26493211,26493300-26493445,26493535-26493922,
26493935-26494092,26494267-26494540,26494721-26494894
Length = 893
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 105 RIPNICVAHFKKLNCFSLTSNKLDT 31
R+P I + H K+ + T NKL+T
Sbjct: 764 RLPEILIIHLKRFSYSRYTKNKLET 788
>04_04_0910 -
29321128-29321276,29321977-29322508,29323301-29323706,
29323933-29324028,29324563-29324645,29326620-29326732,
29327156-29327315
Length = 512
Score = 25.8 bits (54), Expect = 7.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 94 IWYSHPRRYGQGSRSCRSCSNRHG 165
IW H RR G+GS + R +RHG
Sbjct: 306 IWPPHARRDGRGSEAAR--MSRHG 327
>04_03_1044 -
21965237-21965341,21966130-21966300,21966414-21966564,
21968768-21969348
Length = 335
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/48 (22%), Positives = 24/48 (50%)
Frame = +2
Query: 23 LEGVSNLLLVSEKQFNFLKWATQIFGILTLADTDKDLGHADPAPTGMA 166
L G+ N+ +S K + ++G+ +L + D+ + +P+G A
Sbjct: 177 LAGMVNVTTLSSKVYRQRDGTVSLYGVNSLVEASIDVSNCQMSPSGEA 224
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,616,224
Number of Sequences: 37544
Number of extensions: 146807
Number of successful extensions: 302
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 302
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -