Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_L23
(659 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 237 1e-63
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces... 128 5e-31
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma... 120 2e-28
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb... 109 3e-25
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha... 85 1e-17
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce... 77 2e-15
SPAC1687.14c |||EF hand family protein, unknown role|Schizosacch... 44 3e-05
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi... 43 5e-05
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 37 0.003
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo... 34 0.016
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ... 31 0.15
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p... 29 0.45
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom... 29 0.78
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 28 1.0
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 28 1.0
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa... 28 1.4
SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyce... 27 2.4
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 27 3.2
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ... 27 3.2
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 27 3.2
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 27 3.2
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 26 4.2
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 26 4.2
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 4.2
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ... 26 5.5
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe... 25 9.7
SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr 1... 25 9.7
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 25 9.7
>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 237 bits (580), Expect = 1e-63
Identities = 110/145 (75%), Positives = 129/145 (88%)
Frame = +2
Query: 107 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI 286
LT+EQIAEF+EAFSLFD+D DG IT+ ELG VMRSLGQ+PT AELQDMINEVDADGNGTI
Sbjct: 6 LTDEQIAEFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTI 65
Query: 287 DFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDE 466
DF EFLTMMARKMKDTD+EEE+REAF+VFDKDGNG+I+ EL HV+T+LGE+L+ EEV +
Sbjct: 66 DFTEFLTMMARKMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVAD 125
Query: 467 MIREADIDGDGQVNYXEFVTMMTSK 541
MIREAD DGDG +NY EF +++SK
Sbjct: 126 MIREADTDGDGVINYEEFSRVISSK 150
>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 128 bits (310), Expect = 5e-31
Identities = 65/144 (45%), Positives = 94/144 (65%)
Frame = +2
Query: 110 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 289
++EQ E KEAF L+D D DG I T +G+V+RSLG N T+AEL + NE+ ID
Sbjct: 4 SKEQTDEMKEAFVLYDIDKDGLIPTSHVGSVLRSLGINVTDAELAKLSNEL----GDAID 59
Query: 290 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEM 469
+F++ ++ K+++T+SEEE +AFRVFDKD +G+I A+ M LGEKL+D EV M
Sbjct: 60 EKKFMSFVSNKLRETESEEEYIKAFRVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQLM 119
Query: 470 IREADIDGDGQVNYXEFVTMMTSK 541
++EAD G +Y +FV + +K
Sbjct: 120 VQEADPTNSGSFDYYDFVQRIMAK 143
>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 176
Score = 120 bits (288), Expect = 2e-28
Identities = 57/143 (39%), Positives = 84/143 (58%)
Frame = +2
Query: 104 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGT 283
++TEEQ + EAF LFD D D I EL MR+LG N ++E+ ++ + D G G
Sbjct: 30 EITEEQRQDINEAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFDKTGKGY 89
Query: 284 IDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVD 463
+ +F+ +M K+ + D EEI+ AF +FD D G IS LR V L E + D+E++
Sbjct: 90 LQMEDFVRVMTEKIVERDPLEEIKRAFELFDDDETGKISLRNLRRVAKELNENIDDQELE 149
Query: 464 EMIREADIDGDGQVNYXEFVTMM 532
MI E D+D DG++N EF+ +M
Sbjct: 150 AMIEEFDLDQDGEINEQEFIAIM 172
Score = 49.6 bits (113), Expect = 4e-07
Identities = 25/69 (36%), Positives = 38/69 (55%)
Frame = +2
Query: 335 DSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYX 514
+ ++I EAF++FD D + I ELR M LG EV +++R+ D G G +
Sbjct: 34 EQRQDINEAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDFDKTGKGYLQME 93
Query: 515 EFVTMMTSK 541
+FV +MT K
Sbjct: 94 DFVRVMTEK 102
>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 141
Score = 109 bits (263), Expect = 3e-25
Identities = 57/136 (41%), Positives = 89/136 (65%), Gaps = 2/136 (1%)
Frame = +2
Query: 131 FKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTM 310
+K+AFSLFD+ G G I +G ++R+ GQNPT AE+ ++ + + A+ +D +FL +
Sbjct: 8 YKQAFSLFDRHGTGRIPKTSIGDLLRACGQNPTLAEITEIESTLPAE----VDMEQFLQV 63
Query: 311 MARKMK-DTDSE-EEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREAD 484
+ R D + EE + F+VFDKD G I ELR+V+T+LGEKL++EE+DE+++
Sbjct: 64 LNRPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVP 123
Query: 485 IDGDGQVNYXEFVTMM 532
+ DG VNY +FV M+
Sbjct: 124 VK-DGMVNYHDFVQMI 138
Score = 41.9 bits (94), Expect = 8e-05
Identities = 20/62 (32%), Positives = 36/62 (58%)
Frame = +2
Query: 128 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 307
EF + F +FDKD G I EL V+ SLG+ + E+ +++ V +G +++ +F+
Sbjct: 78 EFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVK-DGMVNYHDFVQ 136
Query: 308 MM 313
M+
Sbjct: 137 MI 138
>SPAC926.03 |rlc1||myosin II regulatory light chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 184
Score = 84.6 bits (200), Expect = 1e-17
Identities = 48/140 (34%), Positives = 76/140 (54%)
Frame = +2
Query: 104 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGT 283
QLT QI E KEAF+L DKDGDG I +++ T++ SL Q+ +E D IN + N
Sbjct: 41 QLTSSQIQELKEAFALLDKDGDGNIGREDVKTMLTSLNQDASE----DSINHMFESINPP 96
Query: 284 IDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVD 463
I+ FLT M + ++ EAF FD +G I + +R ++++G+++ +EV+
Sbjct: 97 INLAAFLTAMGSMLCRISPRNDLLEAFSTFDDTQSGKIPISTMRDALSSMGDRMDPQEVE 156
Query: 464 EMIREADIDGDGQVNYXEFV 523
++R G Y +FV
Sbjct: 157 SILR--SYTSHGVFYYEKFV 174
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Frame = +2
Query: 395 ISAAELRHVMTNLGEKLTDEEVDEMIREA----DIDGDGQVNYXEFVTMMTS 538
++A + + +LT ++ E+ +EA D DGDG + + TM+TS
Sbjct: 26 VAAQAAKRASSGAFAQLTSSQIQEL-KEAFALLDKDGDGNIGREDVKTMLTS 76
>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 174
Score = 77.0 bits (181), Expect = 2e-15
Identities = 46/142 (32%), Positives = 77/142 (54%), Gaps = 5/142 (3%)
Frame = +2
Query: 110 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTID 289
+ E+I ++ F D + G+I E ++ S+ NP + L + VD DG G +D
Sbjct: 19 SNEEIERIRKRFIKIDANQSGSIDRNEFLSIP-SVASNPLASRL---FSVVDEDGGGDVD 74
Query: 290 FPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVM-----TNLGEKLTDE 454
F EF+ ++ + EE+++ AF+++D D +G+IS EL V+ TNL E +
Sbjct: 75 FQEFINSLSVFSVHGNKEEKLKFAFKIYDIDRDGYISNGELYLVLKMMVGTNLREDQLQQ 134
Query: 455 EVDEMIREADIDGDGQVNYXEF 520
VD+ I E D D DG++++ EF
Sbjct: 135 IVDKTIMEVDKDRDGKISFEEF 156
>SPAC1687.14c |||EF hand family protein, unknown
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 76
Score = 43.6 bits (98), Expect = 3e-05
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Frame = +2
Query: 311 MARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADID 490
M+ K + +EE EAF +FD G+I +LR LGE LT E++ M+ D+
Sbjct: 1 MSVSTKRLEMDEEAEEAFDLFDVTHKGYIDFEDLRRSCAQLGENLTKEQLQLML---DLA 57
Query: 491 G-DGQVNYXEFVTM 529
G +G+V+ EF +
Sbjct: 58 GTNGKVSREEFAEL 71
Score = 34.7 bits (76), Expect = 0.012
Identities = 23/62 (37%), Positives = 32/62 (51%)
Frame = +2
Query: 116 EQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFP 295
E E +EAF LFD G I ++L LG+N T+ +LQ M++ A NG +
Sbjct: 9 EMDEEAEEAFDLFDVTHKGYIDFEDLRRSCAQLGENLTKEQLQLMLDL--AGTNGKVSRE 66
Query: 296 EF 301
EF
Sbjct: 67 EF 68
>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 42.7 bits (96), Expect = 5e-05
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 12/103 (11%)
Frame = +2
Query: 248 MINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHV-- 421
+ N DAD NG IDF EF+ ++ + + +++ AF+++D D NG IS E+ +
Sbjct: 68 VFNVFDADKNGYIDFKEFICALSVTSRG-ELNDKLIWAFQLYDLDNNGLISYDEMLRIVD 126
Query: 422 ----MTNLGEKLTDEE------VDEMIREADIDGDGQVNYXEF 520
M KL ++E V+++ D + DGQ+ EF
Sbjct: 127 AIYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKDGQLTLEEF 169
Score = 29.9 bits (64), Expect = 0.34
Identities = 18/86 (20%), Positives = 38/86 (44%)
Frame = +2
Query: 275 NGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDE 454
+G ++ EF + + D F VFD D NG+I E ++ ++
Sbjct: 40 SGHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKNGYIDFKEFICALSVTSRGELND 99
Query: 455 EVDEMIREADIDGDGQVNYXEFVTMM 532
++ + D+D +G ++Y E + ++
Sbjct: 100 KLIWAFQLYDLDNNGLISYDEMLRIV 125
>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 614
Score = 36.7 bits (81), Expect = 0.003
Identities = 22/74 (29%), Positives = 36/74 (48%)
Frame = +2
Query: 239 LQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRH 418
L D N++D DG G +D P T+ A + S +E+REA R + D +G + +
Sbjct: 21 LTDQFNKLDVDGKGYLDQP--TTIKAFEDSKKGSYDEVREAIREVNVDSSGRVEPEDFVG 78
Query: 419 VMTNLGEKLTDEEV 460
+ L + + EV
Sbjct: 79 IFNVLKKGVEGTEV 92
Score = 33.5 bits (73), Expect = 0.028
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +2
Query: 311 MARKMKDTDSEE--EIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREAD 484
+ +K + +EE + + F D DG G++ + +K + +EV E IRE +
Sbjct: 6 LQKKYPELTNEEILTLTDQFNKLDVDGKGYLDQPTTIKAFED-SKKGSYDEVREAIREVN 64
Query: 485 IDGDGQVNYXEFV 523
+D G+V +FV
Sbjct: 65 VDSSGRVEPEDFV 77
>SPBC11G11.02c |end3||actin cortical patch component End3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 375
Score = 34.3 bits (75), Expect = 0.016
Identities = 19/68 (27%), Positives = 38/68 (55%)
Frame = +2
Query: 329 DTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVN 508
D + + E FR + + NG++S ++ V+ + KL+ ++++++ ADID DG +
Sbjct: 2 DPQEKNKYWEIFRGLNPE-NGYLSGSKAAGVLRS--SKLSSDKLEKIWDLADIDDDGMFD 58
Query: 509 YXEFVTMM 532
+ EF M
Sbjct: 59 FDEFAIAM 66
>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 31.1 bits (67), Expect = 0.15
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = -2
Query: 496 VAVDIGLANHLVDLLVSEFLSEVGHDVAQLGRGDEAVAVLVEDAE 362
V++ I L ++ L+ FLSE + +G+ DEA+ V+ ++AE
Sbjct: 180 VSIGINLLWGIITLVGVSFLSESPRYLVSIGKDDEAIQVMCKNAE 224
>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 531
Score = 29.5 bits (63), Expect = 0.45
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -2
Query: 496 VAVDIGLANHLVDLLVSEFLSEVGHDVAQLGRGDEAVAVLVEDAEGLAD 350
V++ I L ++ ++ FL E + Q+G+ +EAV VL E AE D
Sbjct: 184 VSIGINLLWGIITMIGILFLPESPRYLIQVGKDEEAVRVLSESAELFPD 232
>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 409
Score = 28.7 bits (61), Expect = 0.78
Identities = 18/81 (22%), Positives = 35/81 (43%)
Frame = +2
Query: 233 AELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAEL 412
A +++ V + N ID E + K+ + ++ E V +DG+ I+ E
Sbjct: 318 ARYNELVQAVSSSSNSEIDEVEDAETIDSKILEKRNDLNNEEPNSVVAEDGSEIITLDEN 377
Query: 413 RHVMTNLGEKLTDEEVDEMIR 475
EKL D +++E ++
Sbjct: 378 DQSPNEATEKLRDNDLEESLK 398
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 28.3 bits (60), Expect = 1.0
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +2
Query: 101 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLG--QNPTEAELQDMINEV 262
D+ E A + +S+FD+D +G IT +E+ +G + A L+D+ + +
Sbjct: 538 DETGEVDNATLEACYSIFDRDLNGDITCEEIELACVEIGKERKSISASLRDLNDSI 593
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +2
Query: 251 INEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDK 379
I+E D + NG + F + + +KD+ EE+ ++F + D+
Sbjct: 545 ISESDDESNGDMIRDSFDRLSSESIKDSQKTEELHDSFGINDE 587
>SPBC418.02 |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 27.9 bits (59), Expect = 1.4
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -2
Query: 628 SNTMLILCVMKQNVYLNSLLFTHTLAGGSLRRHHGDE 518
S T+L + +M QN +LN+ F H A + R+ + +E
Sbjct: 199 SQTVLEILLMNQNSFLNNFNFEHIKADFAFRQKNYEE 235
>SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 210
Score = 27.1 bits (57), Expect = 2.4
Identities = 17/59 (28%), Positives = 31/59 (52%)
Frame = +2
Query: 314 ARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADID 490
AR++K I + ++ D+ + +A EL V LG+ +TD VDE +A+++
Sbjct: 113 ARQLKSQSKNVSIEKIEKLQDEIQDYMDAAGELNEV---LGQNMTDINVDEEELDAELE 168
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 26.6 bits (56), Expect = 3.2
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Frame = +2
Query: 371 FDKDGNGFISAAELRH--------VMTNLGEKLTDEEVDEMIREAD 484
FD D NG ++ + L +TN +L+ EE+D M+ EA+
Sbjct: 476 FDVDANGILNVSALEKGTGKTQKITITNDKGRLSKEEIDRMVSEAE 521
>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 359
Score = 26.6 bits (56), Expect = 3.2
Identities = 17/72 (23%), Positives = 29/72 (40%)
Frame = -2
Query: 586 YLNSLLFTHTLAGGSLRRHHGDELXVIDLAVAVDIGLANHLVDLLVSEFLSEVGHDVAQL 407
Y L T+ G + E+ I+ V DIG + + +F + D +L
Sbjct: 172 YCKRLAPTYETLGKVFKNEPNVEIVKINADVFADIGRLHEVASFPTIKFFPKDDKDKPEL 231
Query: 406 GRGDEAVAVLVE 371
GD ++ L+E
Sbjct: 232 YEGDRSLESLIE 243
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 26.6 bits (56), Expect = 3.2
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -1
Query: 245 LEVRLLWGSVLATSSRCPALWS*WCHR 165
LE++ WGS+ A + +W+ W R
Sbjct: 850 LEMKNYWGSISALCDKMSEIWADWVQR 876
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 26.6 bits (56), Expect = 3.2
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 8/46 (17%)
Frame = +2
Query: 371 FDKDGNGFISAAELRH--------VMTNLGEKLTDEEVDEMIREAD 484
FD D NG ++ + L +TN +L+ EE+D M+ EA+
Sbjct: 476 FDVDANGILNVSALEKGTGKTQKITITNDKGRLSKEEIDRMVAEAE 521
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 26.2 bits (55), Expect = 4.2
Identities = 19/85 (22%), Positives = 31/85 (36%)
Frame = +2
Query: 137 EAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMA 316
+ F FD+D DG + +EL + R P N + +G + + +L +
Sbjct: 311 DLFYQFDRDNDGALNNEELSALFRHTPGLPEIWVSSQFPNSTVLNEHGYVTYNGWLAQWS 370
Query: 317 RKMKDTDSEEEIREAFRVFDKDGNG 391
A+ FD DG G
Sbjct: 371 MITLFDYKTTLAYLAYLGFDTDGRG 395
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 26.2 bits (55), Expect = 4.2
Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +2
Query: 173 TITTKELGTVMRSLGQ-NPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEE 349
T + GT+ S+G + E + ++++ T DFPE L+ +++ EE
Sbjct: 545 TTSLHPFGTLYESIGTIGDPKVEYKAILHDFSCH---TYDFPESLSHCVKRLPTPIPAEE 601
Query: 350 IREAFRVFDK 379
+++ + + DK
Sbjct: 602 LQKRYNLRDK 611
>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 700
Score = 26.2 bits (55), Expect = 4.2
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 586 YLNSLLFTHTLAGGSLRRHHGDELXVIDLAVAV 488
YLNSLL H G L++ H + LAVA+
Sbjct: 299 YLNSLLSVHEKDGVLLQKFHNSYVQYQKLAVAL 331
>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -2
Query: 508 IDLAVAVDIGLANHLVDLLVSEFLSEVGHDVAQL 407
+D++V +D+ +H L S LS HDV Q+
Sbjct: 28 VDVSVDIDVIFPDHTQTLSFSLLLSNTIHDVRQV 61
>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 675
Score = 25.0 bits (52), Expect = 9.7
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -2
Query: 523 DELXVIDLAVAVDIGLANHLVDLL 452
+ L I A +D+GLA HL DLL
Sbjct: 381 EPLNAIKHAYLLDLGLAVHLADLL 404
>SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 484
Score = 25.0 bits (52), Expect = 9.7
Identities = 19/72 (26%), Positives = 33/72 (45%)
Frame = +2
Query: 260 VDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGE 439
V DG+ +P F +A+ KD EE + + +DG+G A L + G+
Sbjct: 414 VGTDGSVYNLYPRFKDRLAQAFKDILGEEIGSKVVTIPAEDGSGV--GAALVSALEAKGK 471
Query: 440 KLTDEEVDEMIR 475
LT + + E ++
Sbjct: 472 ALTSDILAEHLK 483
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/38 (23%), Positives = 19/38 (50%)
Frame = +2
Query: 245 DMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIRE 358
D + + + T + PE + ++ K+KD + E + E
Sbjct: 479 DCLEVLQISVDDTSNIPEIIARLSEKLKDREESEAVTE 516
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,110,155
Number of Sequences: 5004
Number of extensions: 37312
Number of successful extensions: 167
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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