Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_L19
         (523 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein L11|S...   170   9e-44
SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein L11|Schizosac...   170   9e-44
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    27   1.3  
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    27   1.7  
SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|ch...    25   6.8  
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc...    25   9.0  
SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces po...    25   9.0  

>SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 174

 Score =  170 bits (414), Expect = 9e-44
 Identities = 77/101 (76%), Positives = 87/101 (86%)
 Frame = +1

Query: 220 FPRPRYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGI 399
           F + RYT+R FGIRRNEKIA H TVRG KAEEILERGLKV+EYEL++ NFSATGNFGFGI
Sbjct: 47  FSKARYTIRRFGIRRNEKIACHVTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGI 106

Query: 400 QEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVXHRRRKTGK 522
           QEHIDLGIKYDPSIGIYG+DFYVV+ RPG  V  R+ + G+
Sbjct: 107 QEHIDLGIKYDPSIGIYGMDFYVVMDRPGMRVARRKAQRGR 147



 Score = 70.9 bits (166), Expect = 1e-13
 Identities = 34/48 (70%), Positives = 40/48 (83%)
 Frame = +3

Query: 87  DNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKA 230
           + ++N M+ L I KL LNI +GESGDRLTRAAKVLEQL+GQ PVFSKA
Sbjct: 3   EKAQNPMKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKA 50


>SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein
           L11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 174

 Score =  170 bits (414), Expect = 9e-44
 Identities = 77/101 (76%), Positives = 87/101 (86%)
 Frame = +1

Query: 220 FPRPRYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGI 399
           F + RYT+R FGIRRNEKIA H TVRG KAEEILERGLKV+EYEL++ NFSATGNFGFGI
Sbjct: 47  FSKARYTIRRFGIRRNEKIACHVTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGI 106

Query: 400 QEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVXHRRRKTGK 522
           QEHIDLGIKYDPSIGIYG+DFYVV+ RPG  V  R+ + G+
Sbjct: 107 QEHIDLGIKYDPSIGIYGMDFYVVMDRPGMRVARRKAQRGR 147



 Score = 70.9 bits (166), Expect = 1e-13
 Identities = 34/48 (70%), Positives = 40/48 (83%)
 Frame = +3

Query: 87  DNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKA 230
           + ++N M+ L I KL LNI +GESGDRLTRAAKVLEQL+GQ PVFSKA
Sbjct: 3   EKAQNPMKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKA 50


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 11/24 (45%), Positives = 18/24 (75%)
 Frame = -2

Query: 120 YEDSALHF*NYPSEPSSPFYLSST 49
           YE+ + +  +Y S+PSSP Y+SS+
Sbjct: 153 YEEDSYNNYDYTSDPSSPNYISSS 176


>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 234 PRPWKIQAVVL*VAPTPWRHESA 166
           P  W I A +L V P PWR+ S+
Sbjct: 129 PLLWVITAFILIVFPFPWRYRSS 151


>SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 7/30 (23%), Positives = 15/30 (50%)
 Frame = +2

Query: 176 CRQGVGATHRTTACIFQGLGIQCGLLVSVV 265
           C   +  +H +  C+    G+ CG+L  ++
Sbjct: 244 CSSNLDCSHYSRVCVLYSGGVDCGVLARLM 273


>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 536

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 289 TVRGAKAEEILERGLKVREYE 351
           T+ G KA+    RGL++R YE
Sbjct: 432 TLEGHKAKSRSTRGLRIRSYE 452


>SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 458

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +1

Query: 175 VPPRCWSNSQDNSLYFPRPRYTVRSFGIRRNEKIAVHCTVRGAKAE 312
           V  +CW +  +NS  F      V   GI+R+ +  V     G K +
Sbjct: 75  VATKCWVDFVENSDQFCEYLLDVAYKGIKRSRRFIVFINPHGGKGK 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,114,067
Number of Sequences: 5004
Number of extensions: 43159
Number of successful extensions: 129
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)