Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_L19
         (523 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal prote...   172   1e-43
U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal prote...   171   3e-43
AL161712-18|CAC70140.1|  448|Caenorhabditis elegans Hypothetical...    30   0.87 
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AF016685-7|AAG24151.1|  341|Caenorhabditis elegans Seven tm rece...    29   2.0  
AF016685-8|AAG24150.1|  340|Caenorhabditis elegans Seven tm rece...    27   6.2  
U61946-8|AAC24392.1|  185|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>U42845-1|AAA83599.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.2 protein.
          Length = 196

 Score =  172 bits (418), Expect = 1e-43
 Identities = 78/101 (77%), Positives = 88/101 (87%)
 Frame = +1

Query: 220 FPRPRYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGI 399
           F + RYTVR+FGIRRNEKIAVHCTVRG KAEEILE+GLKV+EYEL ++NFS TGNFGFG+
Sbjct: 57  FSKARYTVRTFGIRRNEKIAVHCTVRGPKAEEILEKGLKVKEYELYKENFSDTGNFGFGV 116

Query: 400 QEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVXHRRRKTGK 522
           QEHIDLGIKYDPSIGIYG+DFYVVL R G  +  RRR  G+
Sbjct: 117 QEHIDLGIKYDPSIGIYGMDFYVVLDRAGRRIAKRRRAPGR 157



 Score = 85.4 bits (202), Expect = 2e-17
 Identities = 40/46 (86%), Positives = 43/46 (93%)
 Frame = +3

Query: 93  SKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKA 230
           ++NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKA
Sbjct: 15  ARNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKA 60


>U64844-3|AAB18306.1|  196|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 11.1 protein.
          Length = 196

 Score =  171 bits (416), Expect = 3e-43
 Identities = 78/101 (77%), Positives = 87/101 (86%)
 Frame = +1

Query: 220 FPRPRYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGI 399
           F + RYTVR+FGIRRNEKIAVHCTVRG KAEEILE+GLKV+EYEL ++NFS TGNFGFG+
Sbjct: 57  FSKARYTVRTFGIRRNEKIAVHCTVRGPKAEEILEKGLKVKEYELFKENFSDTGNFGFGV 116

Query: 400 QEHIDLGIKYDPSIGIYGLDFYVVLGRPGFNVXHRRRKTGK 522
           QEHIDLGIKYDP IGIYG+DFYVVL R G  V  RRR  G+
Sbjct: 117 QEHIDLGIKYDPGIGIYGMDFYVVLNRNGVRVSKRRRAPGR 157



 Score = 85.0 bits (201), Expect = 3e-17
 Identities = 40/45 (88%), Positives = 42/45 (93%)
 Frame = +3

Query: 96  KNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKA 230
           +NVMR L I+KLCLNICVGESGDRLTRAAKVLEQLTGQ PVFSKA
Sbjct: 16  RNVMRELKIQKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKA 60


>AL161712-18|CAC70140.1|  448|Caenorhabditis elegans Hypothetical
           protein Y66D12A.23 protein.
          Length = 448

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 289 TVRGAKAEEILERGLKVREY-ELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGI 447
           ++R   AEE+  RG  +  Y E+RR     TG FG G +  +   I +  S+ +
Sbjct: 353 SLREQSAEELQRRGCGIDWYLEMRRRGQPPTGGFGIGFERMLQYLIFFRKSLNL 406


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -2

Query: 390  AKITRGGEVVTPQFIFSDFQTPLKDFFCFSSSDCTMDSNLFITTDT 253
            AK+ + G ++ PQ  FS+F+  +  FF  +    T+  N  I+ D+
Sbjct: 5666 AKMLQTG-IIPPQVNFSEFRDGMGQFFTVNGKKSTISQNSLISIDS 5710


>AF016685-7|AAG24151.1|  341|Caenorhabditis elegans Seven tm
           receptor protein 86 protein.
          Length = 341

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 351 FIFSDFQTPLKDFF-CFSSSDCTMDSNLFIT 262
           ++  DF+  +KDFF C   SD T  S +F T
Sbjct: 300 YVIKDFRIGVKDFFKCGKKSDNTSSSTIFTT 330


>AF016685-8|AAG24150.1|  340|Caenorhabditis elegans Seven tm
           receptor protein 85 protein.
          Length = 340

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 351 FIFSDFQTPLKDFFCFSSSDCTMDSNLFITTDTKRPH 241
           ++  DF+T +K+FF   +   T  S+  +TT  K  H
Sbjct: 300 YVIKDFRTAVKNFFKRGTKSGTSPSSAVLTTKKKAWH 336


>U61946-8|AAC24392.1|  185|Caenorhabditis elegans Hypothetical
           protein F47C12.7 protein.
          Length = 185

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 339 DFQTPLKDFFCFSSSDCTMDSNLFITTDTK 250
           DF T   +F CF S DC+ D+  +  T  K
Sbjct: 61  DFPTFHYEFNCFLSHDCSTDNKWYCQTRAK 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,735,667
Number of Sequences: 27780
Number of extensions: 242841
Number of successful extensions: 678
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)