Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_L16
         (362 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_02_0115 - 11248021-11248101,11249017-11249118                       84   3e-17
05_03_0661 - 16726958-16726966,16727133-16727234                       57   5e-09
05_07_0185 - 28257291-28257616,28258202-28258469,28258580-28260061     28   2.0  
06_03_0336 + 19671500-19672150,19672681-19673301                       27   3.4  
08_02_0588 + 19036509-19039235                                         27   6.0  
04_01_0588 + 7657510-7657992,7658397-7658843                           27   6.0  
02_05_0773 + 31654985-31655365,31655486-31655610,31655712-316560...    27   6.0  
05_04_0124 + 18232961-18236636,18236810-18237288,18237549-182376...    26   7.9  
05_04_0122 + 18198594-18202269,18202551-18202591,18203273-182032...    26   7.9  

>01_02_0115 - 11248021-11248101,11249017-11249118
          Length = 60

 Score = 84.2 bits (199), Expect = 3e-17
 Identities = 37/52 (71%), Positives = 43/52 (82%)
 Frame = +2

Query: 50  MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFCKKGNLK 205
           MAKSKNHT HNQ+ KAH+NGIKKP++ R  ST GMDPKFLRNQR+ +K N K
Sbjct: 1   MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGMDPKFLRNQRYSRKHNKK 52


>05_03_0661 - 16726958-16726966,16727133-16727234
          Length = 36

 Score = 56.8 bits (131), Expect = 5e-09
 Identities = 24/36 (66%), Positives = 29/36 (80%)
 Frame = +2

Query: 50  MAKSKNHTNHNQNRKAHRNGIKKPRKTRHESTLGMD 157
           MAKSKNHT HNQ+ KAH+NGIKKP++ R  ST G +
Sbjct: 1   MAKSKNHTAHNQSYKAHKNGIKKPKRHRQTSTKGFE 36


>05_07_0185 - 28257291-28257616,28258202-28258469,28258580-28260061
          Length = 691

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +2

Query: 113 KKPRKTRHESTLGMDPKFLRNQ-RFCKKG 196
           +KP K R    L +  +F+R+Q + CKKG
Sbjct: 454 RKPTKPRQRGKLKLQSQFIRDQNKICKKG 482


>06_03_0336 + 19671500-19672150,19672681-19673301
          Length = 423

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 148 WHGSKIFKESKVLQEG*PEASQATREGG 231
           WH    FK S+    G PEA+ A  EGG
Sbjct: 223 WHEINQFKSSEKSLVGMPEAAAAEEEGG 250


>08_02_0588 + 19036509-19039235
          Length = 908

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 220 ELLGWLQVTLLAKPLIP*KFWIHAKGGFVPG 128
           ELLGW QV   A  ++P +  + A   F PG
Sbjct: 423 ELLGWKQVLAQAANVLPKRRMVSATRRFPPG 453


>04_01_0588 + 7657510-7657992,7658397-7658843
          Length = 309

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +3

Query: 9   VLSSDSKWIENSSKWQSQRIIQIITKTAKLTEMVSKSQGRPGTNPPLAWIQNF*G 173
           VL S S+W  +SS+W    I + +  T  + +M    Q RP     L W  ++ G
Sbjct: 216 VLPSSSEWRSSSSRWDLGEITRRM-DTLDM-QMGGGQQRRPPAEDGLGWASSWFG 268


>02_05_0773 +
           31654985-31655365,31655486-31655610,31655712-31656026,
           31656145-31656314,31656408-31656751
          Length = 444

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +2

Query: 89  RKAHRNGIKKPRKTRHESTLGMDPKFLRNQRFC 187
           ++AHRNG+K    T H++  G+ P+ + + + C
Sbjct: 121 QRAHRNGVKVLALTDHDTMAGV-PEAIESAKQC 152


>05_04_0124 +
           18232961-18236636,18236810-18237288,18237549-18237629,
           18238033-18238041,18238096-18238248
          Length = 1465

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = +3

Query: 3   LLVLSSDSKWIENSSKWQSQRIIQIITKTAKLTEMVSKSQGRP---GTNPPLA 152
           LLVL  D  W E+  KW++ R +    K      + +++       GT PPLA
Sbjct: 270 LLVL--DDVWNEDEQKWEALRTLLCSCKMGSAVVVTTRNSNVASVMGTVPPLA 320


>05_04_0122 +
           18198594-18202269,18202551-18202591,18203273-18203281,
           18203336-18203551,18204257-18204361,18204761-18204919
          Length = 1401

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = +3

Query: 3   LLVLSSDSKWIENSSKWQSQRIIQIITKTAKLTEMVSKSQGRP---GTNPPLA 152
           LLVL  D  W E+  KW++ R +    K      + +++       GT PPLA
Sbjct: 270 LLVL--DDVWNEDEQKWEALRTLLCSCKMGSAVVVTTRNSNVASVMGTVPPLA 320


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,745,125
Number of Sequences: 37544
Number of extensions: 139829
Number of successful extensions: 479
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 566473892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)