Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_L13
         (555 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY058544-1|AAL13773.1|  560|Drosophila melanogaster LD24478p pro...   105   5e-23
AE014298-2788|AAF48903.1|  560|Drosophila melanogaster CG7332-PA...   105   5e-23
AY119452-1|AAM50106.1|  456|Drosophila melanogaster AT28654p pro...    29   4.2  
AE013599-2389|AAO41367.1|  456|Drosophila melanogaster CG9002-PB...    29   4.2  
AE013599-2388|AAF57924.2|  456|Drosophila melanogaster CG9002-PA...    29   4.2  
X79492-1|CAA56037.1|   56|Drosophila melanogaster transcription ...    28   9.7  

>AY058544-1|AAL13773.1|  560|Drosophila melanogaster LD24478p
           protein.
          Length = 560

 Score =  105 bits (251), Expect = 5e-23
 Identities = 43/75 (57%), Positives = 61/75 (81%)
 Frame = +1

Query: 307 RELAGTRRLLWGDHVKEDVFRRWAQGFQFSPDEPSALIQQEGGPCAAIAPVQGFLLKILL 486
           REL   ++LLWGD+V+EDVF+RW+QGF+FS  EPSAL+Q++GGPCA IAPVQ +LLKI++
Sbjct: 95  RELREIKQLLWGDNVREDVFKRWSQGFEFSKVEPSALVQKQGGPCAVIAPVQAYLLKIII 154

Query: 487 SETPGHSFQDLTSEK 531
            + PG    +++ +K
Sbjct: 155 MDLPGIKLSEISLDK 169


>AE014298-2788|AAF48903.1|  560|Drosophila melanogaster CG7332-PA
           protein.
          Length = 560

 Score =  105 bits (251), Expect = 5e-23
 Identities = 43/75 (57%), Positives = 61/75 (81%)
 Frame = +1

Query: 307 RELAGTRRLLWGDHVKEDVFRRWAQGFQFSPDEPSALIQQEGGPCAAIAPVQGFLLKILL 486
           REL   ++LLWGD+V+EDVF+RW+QGF+FS  EPSAL+Q++GGPCA IAPVQ +LLKI++
Sbjct: 95  RELREIKQLLWGDNVREDVFKRWSQGFEFSKVEPSALVQKQGGPCAVIAPVQAYLLKIII 154

Query: 487 SETPGHSFQDLTSEK 531
            + PG    +++ +K
Sbjct: 155 MDLPGIKLSEISLDK 169


>AY119452-1|AAM50106.1|  456|Drosophila melanogaster AT28654p
           protein.
          Length = 456

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -1

Query: 348 VVPPQQASRACQLALQRHATRTHRFFVTLTITQLQLCVGFNPF 220
           ++PP+   RA    L +   +  ++ + L IT  +L +GF PF
Sbjct: 54  IIPPEIYHRARIYELHKTELQIWKYLIDLIITLCELILGFYPF 96


>AE013599-2389|AAO41367.1|  456|Drosophila melanogaster CG9002-PB,
           isoform B protein.
          Length = 456

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -1

Query: 348 VVPPQQASRACQLALQRHATRTHRFFVTLTITQLQLCVGFNPF 220
           ++PP+   RA    L +   +  ++ + L IT  +L +GF PF
Sbjct: 54  IIPPEIYHRARIYELHKTELQIWKYLIDLIITLCELILGFYPF 96


>AE013599-2388|AAF57924.2|  456|Drosophila melanogaster CG9002-PA,
           isoform A protein.
          Length = 456

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -1

Query: 348 VVPPQQASRACQLALQRHATRTHRFFVTLTITQLQLCVGFNPF 220
           ++PP+   RA    L +   +  ++ + L IT  +L +GF PF
Sbjct: 54  IIPPEIYHRARIYELHKTELQIWKYLIDLIITLCELILGFYPF 96


>X79492-1|CAA56037.1|   56|Drosophila melanogaster transcription
           factor protein.
          Length = 56

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 346 GPPTASVACLPARAPAPRYSHSSFLCYTYYNSTTAVC 236
           G P+ ++  + A   + R+S SS+   TYY+ T   C
Sbjct: 20  GKPSPTMEAVEASTASHRHSTSSYFATTYYHLTDDEC 56


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,110,127
Number of Sequences: 53049
Number of extensions: 526863
Number of successful extensions: 1161
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2131214097
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)