Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_L10
         (537 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        34   0.012
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc...    27   2.3  
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c...    27   2.3  
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    26   3.1  
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    26   4.1  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   4.1  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   4.1  
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom...    26   4.1  
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c...    25   5.4  
SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa...    25   7.2  
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    25   9.5  
SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomy...    25   9.5  
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   9.5  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   9.5  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 34.3 bits (75), Expect = 0.012
 Identities = 18/42 (42%), Positives = 26/42 (61%)
 Frame = +3

Query: 369  DKDGIVKDTVAIEKWNTDSVEEFLNTHLDKEHDDEPDFLKTN 494
            D +G+ KD+V  E  N+DS EE  N  LD+E +D P+ L  +
Sbjct: 3959 DMNGVTKDSVVSENENSDSEEE--NQDLDEEVNDIPEDLSNS 3998


>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 677

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +3

Query: 210 KEKKYARAILEVCTCKFPAYPQIQAFVKSDRPAKFPNLQIKYVRGLDPIIKLL-DKDGIV 386
           K  +  RA+  +    + + P I++     R     N++  +V  +DPI++LL D D  V
Sbjct: 81  KPTEAKRAVKLILNDIYSSNPMIRSLAL--RTLTSVNIKNFWVAAMDPIVRLLDDTDPYV 138

Query: 387 KDTVAI 404
           + T AI
Sbjct: 139 RKTAAI 144


>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 585

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
 Frame = -1

Query: 264 LEICMYRLLIWLERISFLLKLIHLNDNTPYSDL---RVVPS*NLSIDHMKSK 118
           +E+C  +  IW++ ++FL   +H+  N  ++     R     N S  H+ SK
Sbjct: 90  IELCNQKFEIWVDGLTFLGCPVHIGPNGEWAKRRKPRTTVESNASSSHLVSK 141


>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1052

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 45  TYDGAVAEFSTEDCASLGFIKANLLCSSC 131
           TYD ++A+    D ++L   KAN LC+ C
Sbjct: 405 TYDSSLAD-DHSDTSNLSKDKANTLCAQC 432


>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +3

Query: 60  VAEFSTEDCA-SLGFIKANLL-CSSCDQLKDFSLEQLVDHCKECCHSD 197
           V  +S + C  S+G++K  L  C +C +    SL  +   C   CH+D
Sbjct: 27  VLPYSFDTCTYSMGYLKQPLYACLTCQKASG-SLNAVCYSCSISCHAD 73


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 120 CSSCDQLKDF-SLEQLVDHCKECCHSDESASKE 215
           C +C     F ++E++V H KEC + DE+   +
Sbjct: 21  CFTCQCGTQFDNVERIVQHFKECRYRDETCKDD 53


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 120 CSSCDQLKDF-SLEQLVDHCKECCHSDESASKE 215
           C +C     F ++E++V H KEC + DE+   +
Sbjct: 21  CFTCQCGTQFDNVERIVQHFKECRYRDETCKDD 53


>SPBC3F6.05 |rga1||GTPase activating protein
           Rga1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1150

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 78  EDCASLGFIKANLLCSSCDQLK 143
           EDC  LG I+ ++ C SC + K
Sbjct: 494 EDCVLLGEIRCHIGCLSCTKCK 515


>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 313 NFAGLSLFTKAWICGYAGNLHVQTS 239
           NFA + +F   W  G  GNL V ++
Sbjct: 170 NFASICVFDALWSFGVGGNLPVDSA 194


>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 18/70 (25%), Positives = 30/70 (42%)
 Frame = -3

Query: 445 VFKNSSTESVFHFSMATVSFTMPSLSSSLIIGSKPRTYLI*RLGNFAGLSLFTKAWICGY 266
           +F  S  +  F   +++    +    + L I + PR Y   +  NF+ L  F +A IC  
Sbjct: 74  IFSESKMDFQFPLFLSSCQMLVQMGFAKLTILAFPR-YQPNKKDNFSWLEYFYRAGICAL 132

Query: 265 AGNLHVQTSN 236
              L +  SN
Sbjct: 133 VTGLDIGLSN 142


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 310 NSLIFKSNMYVAWI 351
           N L+ K NMY AWI
Sbjct: 357 NKLLNKDNMYTAWI 370


>SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 482

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 135 QLKDFSLEQLVDHCKECCHSDESASKEKKYAR 230
           Q+ D ++EQL  H K      E A+KE+K  R
Sbjct: 51  QITDEAIEQLKAHVKITAPEFEIAAKEEKRQR 82


>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 642

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 124 EQSRLALIKPREAQSSVENSAT 59
           + + LA  + REAQSS+E SA+
Sbjct: 152 QDAELASERAREAQSSIERSAS 173


>SPBC23E6.09 |ssn6||transcriptional corepressor
            Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 17/60 (28%), Positives = 24/60 (40%)
 Frame = -3

Query: 187  QHSLQ*STSCSKLKSFN*SHEEQSRLALIKPREAQSSVENSATAPSYVTSTAKTETLPNT 8
            QH L            N SH E+S     K RE ++S  N +  P   T    ++ L N+
Sbjct: 831  QHKLSDQPRSRNNSISNVSHRERSNSVSSKSRETRTSASNESD-PKKSTQRDSSKKLENS 889


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,174,246
Number of Sequences: 5004
Number of extensions: 44542
Number of successful extensions: 136
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)