Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_L10
         (537 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1645 + 38884606-38884777,38885509-38885567,38885933-388861...    91   7e-19
05_01_0328 - 2571155-2571627,2571894-2572197                           29   2.3  
01_06_1551 - 38200370-38201061,38202071-38202109,38203967-38204897     28   4.1  
12_02_0272 - 16634765-16635004,16635412-16635457,16636107-166380...    28   5.4  
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119...    27   7.2  
07_01_0565 + 4188387-4190570                                           27   9.5  
02_05_1088 - 34004961-34005059,34005607-34005651,34005827-34006165     27   9.5  
02_05_1087 - 34001290-34001316,34001513-34001557,34001733-34002071     27   9.5  

>01_06_1645 +
           38884606-38884777,38885509-38885567,38885933-38886114,
           38886559-38886634
          Length = 162

 Score = 90.6 bits (215), Expect = 7e-19
 Identities = 46/126 (36%), Positives = 71/126 (56%), Gaps = 2/126 (1%)
 Frame = +3

Query: 69  FSTEDCASLGFIKANLLCSSCDQLKDFSLEQ-LVDHCKECCHSDESASKEK-KYARAILE 242
           F   +C  LGF     LCS C+ L +F  +Q LV+ C++CC  D   S  K  ++ AI+E
Sbjct: 28  FGARECEELGFTGL-ALCSDCNALAEFVKDQELVEDCRKCCTEDSDDSISKLTFSGAIIE 86

Query: 243 VCTCKFPAYPQIQAFVKSDRPAKFPNLQIKYVRGLDPIIKLLDKDGIVKDTVAIEKWNTD 422
           VC  K   YP+I  F++ D+   FP ++ +YV G  P + +LD  G  K+T+ I+ W  +
Sbjct: 87  VCMRKLVFYPEIVGFLEEDKD-DFPYVEARYVYGSPPKLIMLDDKGDQKETIRIDNWKRE 145

Query: 423 SVEEFL 440
            + +FL
Sbjct: 146 HIRQFL 151


>05_01_0328 - 2571155-2571627,2571894-2572197
          Length = 258

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 9/39 (23%), Positives = 23/39 (58%)
 Frame = +3

Query: 141 KDFSLEQLVDHCKECCHSDESASKEKKYARAILEVCTCK 257
           K + +  + DHC++    D++ +K+++Y+ A +    C+
Sbjct: 133 KLYQIVVICDHCEDSFRQDKAVNKQRRYSEARITEIDCE 171


>01_06_1551 - 38200370-38201061,38202071-38202109,38203967-38204897
          Length = 553

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -3

Query: 436 NSSTESVFHFSMATVSFTMPSLSSSL 359
           N+ T  V  F+ ATV FT+PS+++ L
Sbjct: 296 NADTPGVSTFNTATVGFTLPSVTTRL 321


>12_02_0272 -
           16634765-16635004,16635412-16635457,16636107-16638098,
           16639478-16640286
          Length = 1028

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 411 WNTDSVEEFLNTHLDKEHDDEPDFLKTNRI*C 506
           W T+S+ ++L+ HLD       D    N + C
Sbjct: 725 WPTESILDYLSQHLDTPASSHSDLFSPNLVAC 756


>08_01_0152 -
           1190358-1190462,1190648-1190765,1191134-1192691,
           1193338-1193530
          Length = 657

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/56 (21%), Positives = 28/56 (50%)
 Frame = +3

Query: 132 DQLKDFSLEQLVDHCKECCHSDESASKEKKYARAILEVCTCKFPAYPQIQAFVKSD 299
           D L+++S++  +   +  CHS   + + K   + +    TC+  A  + ++ V+ D
Sbjct: 417 DVLRNYSVKPRIGELRTACHSFGPSGRTKIPKKGVTTGYTCRLAAPERHKSIVRPD 472


>07_01_0565 + 4188387-4190570
          Length = 727

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 177 KECCHSDESASKEKKYARAILEVCTCKFP 263
           K+C  + E+   E KY   ILE C  K P
Sbjct: 604 KDCLGNVENGPMEFKYTLTILEACQSKSP 632


>02_05_1088 - 34004961-34005059,34005607-34005651,34005827-34006165
          Length = 160

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
 Frame = +3

Query: 63  AEFSTEDCASLGFIKANLLCSSCDQLKDFSLEQLVDHCKECCHS--DESASKEKKYARA 233
           A    + C    FIK   +  +   +KD   ++ +D C   C++   E  +  KK A +
Sbjct: 46  APIDEKQCEDFCFIKTKSIFEAHKGVKDLKADRFIDFCNNECNAVYKEDPATSKKCAES 104


>02_05_1087 - 34001290-34001316,34001513-34001557,34001733-34002071
          Length = 136

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
 Frame = +3

Query: 63  AEFSTEDCASLGFIKANLLCSSCDQLKDFSLEQLVDHCKECCHS--DESASKEKKYARA 233
           A    + C    FIK   +  +   +KD   ++ +D C   C++   E  +  KK A +
Sbjct: 46  APIDEKQCEDFCFIKTKSIFEAHKGVKDLKADRFIDFCNNECNAVYKEDPATSKKCAES 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,634,944
Number of Sequences: 37544
Number of extensions: 238373
Number of successful extensions: 697
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)