Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_L06
(637 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1361 - 26398987-26399019,26399320-26399387,26399458-263995... 128 5e-30
09_02_0105 - 4337047-4337079,4337175-4337242,4337323-4337425,433... 120 7e-28
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196... 29 3.1
09_04_0308 + 16567361-16568854,16568946-16569068,16569372-165696... 29 4.1
06_01_0776 - 5805555-5805639,5805769-5806008,5806103-5806173,580... 27 9.4
02_05_1273 + 35381626-35382486,35382567-35382691,35384851-353854... 27 9.4
>08_02_1361 -
26398987-26399019,26399320-26399387,26399458-26399560,
26399658-26399888,26400791-26400826,26400891-26400931,
26401028-26401064,26401158-26401160
Length = 183
Score = 128 bits (308), Expect = 5e-30
Identities = 60/95 (63%), Positives = 72/95 (75%)
Frame = +2
Query: 257 QSSLAQHRXRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRA 436
+S + + RWP KSA F+L LL+NAESNAD K LDVD L + HIQVN+A RRRTYRA
Sbjct: 86 KSRQSNGQGRWPAKSARFILDLLKNAESNADVKGLDVDNLFVSHIQVNQAQKQRRRTYRA 145
Query: 437 HGRINPYMSSPCHIEVCLSEREDAVARVAPTDDAP 541
HGRINPYMSSPCH+E+ LSE+E+AV + T AP
Sbjct: 146 HGRINPYMSSPCHVELILSEKEEAVKKEPETTIAP 180
Score = 67.7 bits (158), Expect = 7e-12
Identities = 36/65 (55%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Frame = +1
Query: 70 LRNHAKRVVQTSXVHF-KNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGR 246
LR H K +V V NT ETA A+RK+PL +A RYL++VI K+ IPFRR+ GGVGR
Sbjct: 22 LRVHFKVIVFARFVQCCSNTRETAFALRKLPLVKAKRYLEDVIAHKQAIPFRRYCGGVGR 81
Query: 247 CAQAK 261
AQ K
Sbjct: 82 TAQVK 86
Score = 36.3 bits (80), Expect = 0.020
Identities = 15/23 (65%), Positives = 17/23 (73%)
Frame = +3
Query: 39 MGRYSREPDNPAKSCKARGSNLR 107
MG+YS EP NP KS KA G +LR
Sbjct: 1 MGKYSTEPSNPTKSAKAMGRDLR 23
>09_02_0105 -
4337047-4337079,4337175-4337242,4337323-4337425,
4337507-4337737,4339307-4339347,4339437-4339473,
4339603-4339605
Length = 171
Score = 120 bits (290), Expect = 7e-28
Identities = 55/78 (70%), Positives = 64/78 (82%)
Frame = +2
Query: 284 RWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMS 463
RWP KSA F+L LL+NAESNA+ K LDVD L + HIQVN+A RRRTYRAHGRINPYMS
Sbjct: 83 RWPAKSARFILDLLKNAESNAEVKGLDVDTLYVSHIQVNQAQKQRRRTYRAHGRINPYMS 142
Query: 464 SPCHIEVCLSEREDAVAR 517
SPCHIE+ LSE+E+ V +
Sbjct: 143 SPCHIELILSEKEEPVKK 160
Score = 77.0 bits (181), Expect = 1e-14
Identities = 36/51 (70%), Positives = 42/51 (82%)
Frame = +1
Query: 109 VHFKNTYETAMAIRKMPLRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAK 261
VHFKNT ETA AIRK+PL +A RYL++VI K+ IPFRR+ GGVGR AQAK
Sbjct: 24 VHFKNTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAK 74
Score = 31.9 bits (69), Expect = 0.44
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +3
Query: 39 MGRYSREPDNPAKSCKARGSNLR 107
M +YSRE +NP KS KA G +LR
Sbjct: 1 MVKYSREANNPTKSSKAMGRDLR 23
>01_05_0279 + 20318440-20318688,20318785-20318931,20319449-20319611,
20319770-20319887,20320607-20320676,20320774-20320854,
20320924-20320959,20321129-20321149,20321586-20321642,
20321716-20321827,20321905-20322178,20322454-20322556,
20323244-20323459,20324615-20324665,20325339-20327963
Length = 1440
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +2
Query: 293 KKSAEFLLQLLRNAE--SNADNKTLDVDRLVIDHIQVNRAPCLR 418
K EF Q+ + +E S + + L + + I H+ + APCLR
Sbjct: 1033 KSKEEFFCQVYKGSEACSIENTRRLSIQNVSIQHLSGSSAPCLR 1076
>09_04_0308 + 16567361-16568854,16568946-16569068,16569372-16569649,
16570316-16571924,16572363-16573781
Length = 1640
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -3
Query: 356 FCCQRLIQRSSITARGIRRISWASXPCVVPNCFA*AQRPTPP 231
F C RL +S+ RG+ I WA+ V P A +P P
Sbjct: 1129 FNCHRLADKSNFKKRGLLGIEWAANGPVQPFIQAGPSKPKYP 1170
>06_01_0776 -
5805555-5805639,5805769-5806008,5806103-5806173,
5806274-5806627
Length = 249
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 535 CPSEEKAFQEKACASKGEDDE 597
C EE+A EK C GED +
Sbjct: 108 CSGEEEAMAEKVCTQAGEDHD 128
>02_05_1273 +
35381626-35382486,35382567-35382691,35384851-35385450,
35385550-35385841,35386199-35386364,35386664-35386707,
35386866-35386979,35387171-35387290,35387541-35387626,
35388340-35388502
Length = 856
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Frame = +2
Query: 257 QSSLAQHRXRWPKKSAEFLLQLLRNAESNAD---NKTLDVDRLVIDHIQ 394
Q SL RWP ++AE RN E NA+ ++T++ D DH+Q
Sbjct: 427 QPSLDDSLDRWPNETAE---DAERNWEDNAEELHSETMEDDAREHDHLQ 472
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,206,986
Number of Sequences: 37544
Number of extensions: 358528
Number of successful extensions: 968
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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