Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_L04
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    28   1.3  
SPAC5D6.04 |||auxin family transmembrane transporter |Schizosacc...    27   3.1  
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|...    26   4.0  
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    25   9.3  
SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   9.3  

>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +2

Query: 383 FIIFSKVLINLNLLIHISFITLHSGPKMYVIVSVSFM 493
           FIIFS ++I L  +  ISF+ L S   + V + + F+
Sbjct: 144 FIIFSPIIITLPFIALISFLHLRSLSSLTVSIWLRFL 180


>SPAC5D6.04 |||auxin family transmembrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +2

Query: 386 IIFSKVLINLNLLIHISFITLHSGPKMYVIVSVSFMCILYLLA 514
           ++F KV   LNL + I    L   P  YVI+S + + I +LLA
Sbjct: 62  LVFEKVGNGLNLKMLIDLSLL---PVFYVIISAASILISFLLA 101


>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +1

Query: 322 DSHNLAFTKSLLTRLSD*ENFYNFQQGTNKS--ESINSY*FHHVT 450
           D  NL FTK+LLTR+       N    TNKS   S+ SY F   T
Sbjct: 283 DEDNLDFTKNLLTRIK------NLHPLTNKSTIHSLLSYVFSRQT 321


>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 77  ICAFGKKMLLICQYRLI*I*SSPSKNTVQNLHKI 178
           I +F K    + QY L  + S   K+ VQN+HKI
Sbjct: 258 ISSFEKLPESVRQYLLFHLLSRCGKHAVQNIHKI 291


>SPBC776.05 |||membrane transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +2

Query: 140 SPSKNTVQNLHK-IKVNT*PVIYLRCRSEEFCDCQWNTKSIIRFSD-LPIIVQKSDCRL 310
           S  KN +Q +HK I   T  +     +S +    QWN+  ++RF D L   +  S C L
Sbjct: 66  SRQKNKLQPIHKQINYETDKLKERLGKSIDKFQEQWNSGKVVRFRDKLSFALGVSTCIL 124


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,331,095
Number of Sequences: 5004
Number of extensions: 44154
Number of successful extensions: 69
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)