Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_L03
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces...    28   1.4  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    27   2.4  
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    26   4.2  
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    26   5.5  
SPCC70.09c |mug9||conserved fungal protein|Schizosaccharomyces p...    26   5.5  
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   7.3  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    25   9.6  

>SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 366

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +2

Query: 167 DDLLTAVITPTMSRDYYR-PWKQMAMANRDVGSTITSNKDKFQVNLDVQHFSPEEIS 334
           D  +   I  ++S++Y + P+K +  A     +  T ++   ++N D + F+PE IS
Sbjct: 107 DSAVAKTIEESISKNYPKCPFKVIGEAELLNRTIATDSRGNIEINADNEKFNPEVIS 163


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1334

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 111  RMNGSSDIFILCFRMXKYQVISQFVRTRNTAFVNWQ 4
            RMNG    F+LC+    + V     R+R T FV W+
Sbjct: 1210 RMNGGE--FLLCYSQFAFYVNRDGWRSRPTWFVVWE 1243


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = +2

Query: 137 DQDFG--LALTPDDLLTAVITPTMSR--DYYRPWKQMAMANRDVGSTITSNKDKFQVNLD 304
           D  FG  + L+P   +T ++   ++R  DY +   +   +N D   T+T      ++N +
Sbjct: 229 DTYFGTVIKLSPSVNVTQLVVAMLNRLTDYVQREYESDSSNEDESETVTEKLGDIKINEE 288

Query: 305 VQHFSPEE 328
           VQ    +E
Sbjct: 289 VQQKDEQE 296


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 395 HGYISRQFTRRYALPENCNPDT 460
           HG +S+   +R+ L  NC P T
Sbjct: 269 HGSLSKSIIKRFNLRGNCEPQT 290


>SPCC70.09c |mug9||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 208

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 509 RTPAATKNERAVPITQTGPVRKEIKE 586
           R PAA + +  VPITQ    + E+K+
Sbjct: 172 RRPAAMRAQTLVPITQPDSKKNELKQ 197


>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -1

Query: 536 ARSSWQPESWERSRSARR 483
           ++  WQP+SW+ SR+  +
Sbjct: 70  SKEGWQPKSWKSSRNENK 87


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 342 QPTATSSSKVSTRRGRTSMATSLVSSR 422
           QPT  S + + +  GR+S+A+S  SSR
Sbjct: 539 QPTRRSRTPIRSLSGRSSVASSRNSSR 565


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,519,434
Number of Sequences: 5004
Number of extensions: 48960
Number of successful extensions: 161
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)