Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_L02
(471 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 121 6e-29
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 121 6e-29
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 118 3e-28
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 118 3e-28
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 118 3e-28
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 72 4e-14
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 36 0.003
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 32 0.038
SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces pomb... 28 0.83
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 27 1.9
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 4.4
SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha... 25 5.8
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha... 25 7.7
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 121 bits (291), Expect = 6e-29
Identities = 54/63 (85%), Positives = 55/63 (87%)
Frame = +1
Query: 220 IQKESTLHLVLRLRGGTIEPPLRILAMKYNCEKMICRKCYARLHPRATNCRKTKCGHTNN 399
IQKESTLHLVLRLRGG IEP L+ LA KYNCEK ICRKCYARL PRATNCRK KCGHTN
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTNQ 120
Query: 400 LRP 408
LRP
Sbjct: 121 LRP 123
Score = 118 bits (285), Expect = 3e-28
Identities = 56/59 (94%), Positives = 59/59 (100%)
Frame = +3
Query: 39 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 215
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 121 bits (291), Expect = 6e-29
Identities = 54/63 (85%), Positives = 55/63 (87%)
Frame = +1
Query: 220 IQKESTLHLVLRLRGGTIEPPLRILAMKYNCEKMICRKCYARLHPRATNCRKTKCGHTNN 399
IQKESTLHLVLRLRGG IEP L+ LA KYNCEK ICRKCYARL PRATNCRK KCGHTN
Sbjct: 61 IQKESTLHLVLRLRGGIIEPSLKALASKYNCEKQICRKCYARLPPRATNCRKKKCGHTNQ 120
Query: 400 LRP 408
LRP
Sbjct: 121 LRP 123
Score = 118 bits (285), Expect = 3e-28
Identities = 56/59 (94%), Positives = 59/59 (100%)
Frame = +3
Query: 39 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 215
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 118 bits (285), Expect = 3e-28
Identities = 56/59 (94%), Positives = 59/59 (100%)
Frame = +3
Query: 39 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 215
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59
Score = 35.5 bits (78), Expect = 0.004
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +1
Query: 220 IQKESTLHLVLRLRGG 267
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 118 bits (285), Expect = 3e-28
Identities = 56/59 (94%), Positives = 59/59 (100%)
Frame = +3
Query: 39 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 215
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59
Score = 118 bits (285), Expect = 3e-28
Identities = 56/59 (94%), Positives = 59/59 (100%)
Frame = +3
Query: 39 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 215
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 135
Score = 118 bits (285), Expect = 3e-28
Identities = 56/59 (94%), Positives = 59/59 (100%)
Frame = +3
Query: 39 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 215
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 211
Score = 118 bits (285), Expect = 3e-28
Identities = 56/59 (94%), Positives = 59/59 (100%)
Frame = +3
Query: 39 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 215
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 287
Score = 118 bits (285), Expect = 3e-28
Identities = 56/59 (94%), Positives = 59/59 (100%)
Frame = +3
Query: 39 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 215
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 363
Score = 35.5 bits (78), Expect = 0.004
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +1
Query: 220 IQKESTLHLVLRLRGG 267
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
Score = 35.5 bits (78), Expect = 0.004
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +1
Query: 220 IQKESTLHLVLRLRGG 267
IQKESTLHLVLRLRGG
Sbjct: 137 IQKESTLHLVLRLRGG 152
Score = 35.5 bits (78), Expect = 0.004
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +1
Query: 220 IQKESTLHLVLRLRGG 267
IQKESTLHLVLRLRGG
Sbjct: 213 IQKESTLHLVLRLRGG 228
Score = 35.5 bits (78), Expect = 0.004
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +1
Query: 220 IQKESTLHLVLRLRGG 267
IQKESTLHLVLRLRGG
Sbjct: 289 IQKESTLHLVLRLRGG 304
Score = 35.5 bits (78), Expect = 0.004
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +1
Query: 220 IQKESTLHLVLRLRGG 267
IQKESTLHLVLRLRGG
Sbjct: 365 IQKESTLHLVLRLRGG 380
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 118 bits (285), Expect = 3e-28
Identities = 56/59 (94%), Positives = 59/59 (100%)
Frame = +3
Query: 39 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 215
MQIFVKTLTGKTITLEVE+SDTI+NVK+KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 59
Score = 35.5 bits (78), Expect = 0.004
Identities = 16/16 (100%), Positives = 16/16 (100%)
Frame = +1
Query: 220 IQKESTLHLVLRLRGG 267
IQKESTLHLVLRLRGG
Sbjct: 61 IQKESTLHLVLRLRGG 76
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 72.1 bits (169), Expect = 4e-14
Identities = 30/59 (50%), Positives = 43/59 (72%)
Frame = +3
Query: 39 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 215
M I VKTLTGK I L+++ +D + +K ++++KEGIPP QQRLI+AGKQ+ D + Y
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESY 59
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 35.9 bits (79), Expect = 0.003
Identities = 15/43 (34%), Positives = 27/43 (62%)
Frame = +3
Query: 66 GKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLED 194
GK LE+E ++T +K ++ +PP++Q++I G QL+D
Sbjct: 10 GKKYDLEIEPNETGSTLKHQLYSLTQVPPERQKVIVKGGQLKD 52
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 32.3 bits (70), Expect = 0.038
Identities = 15/59 (25%), Positives = 31/59 (52%)
Frame = +3
Query: 39 MQIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDY 215
+ + +K + + V++ ++ +K I I ++QRLI+AG+ L+D +L Y
Sbjct: 4 ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTY 62
>SPAC13F5.03c |||glycerol dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 27.9 bits (59), Expect = 0.83
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +2
Query: 194 WPHSFRLXPSRKNPHFT 244
W FRL PSR +PH T
Sbjct: 430 WTERFRLPPSRHSPHLT 446
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 26.6 bits (56), Expect = 1.9
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +3
Query: 42 QIFVKTLTGKTITLEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYXH 221
+I V T+ K +V + T+ +K I P D+ +LI AG+ L + L + H
Sbjct: 5 RIRVTTVDQKVGIFQVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRNETPLEEILH 64
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.4 bits (53), Expect = 4.4
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -2
Query: 119 FDIFDSVGSFHLQCNGLPRKGFDEYLHCVAPMKNV 15
F ++S+G + L C + FDEYL+ A ++NV
Sbjct: 2887 FKPYESLGKYMLSCLDDGKYAFDEYLY-HAEIQNV 2920
>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
synthase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 541
Score = 25.0 bits (52), Expect = 5.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 113 IFDSVGSFHLQCNGLPRKGFDEYL 42
IF VG+F C+ L ++GF E L
Sbjct: 43 IFPGVGNFGFVCDSLAKQGFLEPL 66
>SPCC1753.02c |git3||G-protein coupled receptor
Git3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 24.6 bits (51), Expect = 7.7
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = -3
Query: 124 LALTFSIVSEASTSNVMVFPVRVLTNICIVLLL 26
L TF++ STS++++ R L N+ I++++
Sbjct: 4 LDYTFNVSDATSTSSIIIVSRRELANLRIMVII 36
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,972,092
Number of Sequences: 5004
Number of extensions: 40563
Number of successful extensions: 130
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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