Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_K18
         (659 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   1.0  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    28   1.4  
SPBC530.06c |||translation initiation factor eIF3 alpha subunit ...    27   1.8  
SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly prot...    26   5.5  
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar...    25   7.3  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    25   9.7  
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo...    25   9.7  

>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 368

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 133 ASHAPGSSLDITTEFRGNKEDANKIDCVLMAEHHNASVL 249
           +S  P  SLD   E+ GN  D + +   L   H++ S L
Sbjct: 311 SSSLPTLSLDFKQEYSGNNHDMSGLSSSLSKSHNSTSAL 349


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 476 LYKLIKKMPKGAVLHAHDTSLLGPDYVLELT 568
           +YK+  K P   V HAHD S++   Y L ++
Sbjct: 371 VYKVDGKAPVSTVSHAHDNSIVALRYNLRIS 401


>SPBC530.06c |||translation initiation factor eIF3 alpha subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 20/65 (30%), Positives = 29/65 (44%)
 Frame = +2

Query: 212 VFLWLSIIMQAFCNTTHETVKKKRNELFEKELEMMLGRDIVLNENETKVNEIFMKLKTKE 391
           V L+  + +QAF N  H   KKK      K +E+  G  I L+  + K N   ++     
Sbjct: 591 VQLFYEMKLQAFVNANHNAPKKKNLNDSLKSVELE-GNGIKLSSEKGKNNVNKVRNDNAR 649

Query: 392 LDQGF 406
            D GF
Sbjct: 650 FDCGF 654


>SPCC4B3.17 |cbp3||ubiquinol cytochrome-c reductase assembly protein
           Cbp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 283

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 506 GAVLHAHDTSLLGPDYVLELTYWKDLYI 589
           GA+   +D  +LG D VL  + W++L++
Sbjct: 206 GAIF-GYDQGMLGSDAVLATSVWRNLFV 232


>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
           I|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 502 WHFFNQLVQFSFLDIIF 452
           WH F   VQ+ FL I++
Sbjct: 687 WHMFTSFVQYIFLSIMY 703


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 27/103 (26%), Positives = 46/103 (44%)
 Frame = +2

Query: 266 TVKKKRNELFEKELEMMLGRDIVLNENETKVNEIFMKLKTKELDQGFRHRRPFVLSKHFF 445
           T+K +++ L    LE+ML +   L+E E    E+F +     + Q  + +R F  S    
Sbjct: 463 TMKIQKSLLVNWLLELMLAKLNSLDEKERL--ELFPE---NVMQQRQQVQREF--STLLN 515

Query: 446 EYKDDVKKTELYKLIKKMPKGAVLHAHDTSLLGPDYVLELTYW 574
           +YKD++ +   Y L     K   L    T +    Y++   YW
Sbjct: 516 QYKDEINREAAYNLANNYGKEEQLLQIATVMKDQSYIMH--YW 556


>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
           component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 536

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = +2

Query: 239 QAFCNTTHETVKKKRNELFEKELEMMLGRDIVLNENETKVNEIFMKLKTK 388
           QA+ + +   ++KK+ ++ +K+ E+M  R IVL E    V  +    K K
Sbjct: 453 QAWTSESERELEKKKEQVEKKQEELMQTR-IVLEEQVFLVENMIEDAKAK 501


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,644,391
Number of Sequences: 5004
Number of extensions: 52734
Number of successful extensions: 139
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)