Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_K18
(659 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0289 + 13972020-13972077,13972444-13973301,13973850-139742... 30 1.9
04_01_0283 + 3768732-3768792,3769235-3769876,3769907-3770076,377... 30 1.9
08_02_1532 + 27675824-27676531 29 3.3
04_04_0320 + 24364369-24366165 29 4.3
03_06_0676 - 35460281-35460648,35462097-35462382 29 4.3
12_01_0398 - 3143745-3143777,3144045-3144126,3144863-3144975,314... 28 5.7
08_02_1531 + 27674064-27674771 28 5.7
10_01_0171 + 1917520-1918056,1919201-1919336,1921873-1922060,192... 28 7.6
>04_03_0289 +
13972020-13972077,13972444-13973301,13973850-13974235,
13974249-13974323,13975824-13976139,13976284-13977113
Length = 840
Score = 29.9 bits (64), Expect = 1.9
Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 1/107 (0%)
Frame = +2
Query: 218 LWLSIIMQAFCNTTHETVKKK-RNELFEKELEMMLGRDIVLNENETKVNEIFMKLKTKEL 394
L +S+ C ++K+ R + F+K ++L + I+ ++N T +IF + ++
Sbjct: 485 LLVSLSATFICRRWKRDIQKQLRRKHFQKNQGLLLEQLILSDQNATDKTKIFSLEELEKA 544
Query: 395 DQGFRHRRPFVLSKHFFEYKDDVKKTELYKLIKKMPKGAVLHAHDTS 535
F R H YK+ +Y I VLH+ +S
Sbjct: 545 TNNFDSTRILGRGGHGMVYKETEVPLLVYDFIPNGSLFGVLHSGSSS 591
>04_01_0283 +
3768732-3768792,3769235-3769876,3769907-3770076,
3770134-3770511,3770602-3770991
Length = 546
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/73 (26%), Positives = 35/73 (47%)
Frame = +2
Query: 251 NTTHETVKKKRNELFEKELEMMLGRDIVLNENETKVNEIFMKLKTKELDQGFRHRRPFVL 430
+T +E + K +L K E+ +D+V +ENE K ++ ++K + G
Sbjct: 203 DTQNEEITKDLEDLKTKLEEIKTNKDLVESENEEKYSQSEAEIKYLKQVMGAVVEAKEAA 262
Query: 431 SKHFFEYKDDVKK 469
+K F K+D+ K
Sbjct: 263 AKAFAAEKEDIMK 275
>08_02_1532 + 27675824-27676531
Length = 235
Score = 29.1 bits (62), Expect = 3.3
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Frame = +2
Query: 227 SIIMQAFCNTTHETVKKKRNELFEKELEMMLGRDIVLNENETKVNEIFMKLKT--KELDQ 400
S I + C +++ ++ +LF++E+E L + N +NE+F +LK+ ++L
Sbjct: 51 SSIEEIMCLPSNQVCSSQQRKLFDREMECSLELLDLCN----AMNEVFTELKSIIQDLQV 106
Query: 401 GFRHRRPFVLSKHFFEYKDDVKKTELY--KLIKKM 499
R V+ Y VKK + + K +KK+
Sbjct: 107 SLRKGDDAVVQAKILSYIRLVKKAKKHSKKTVKKV 141
>04_04_0320 + 24364369-24366165
Length = 598
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +2
Query: 143 LLDRRLI*QQNFEVIKKMPTKLTVFLWLSII 235
LL R + Q+ ++VIK MP + VF W++++
Sbjct: 463 LLGRAGLIQEAYDVIKAMPMRPGVFTWVTLL 493
>03_06_0676 - 35460281-35460648,35462097-35462382
Length = 217
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +2
Query: 203 KLTVFLWLSIIMQAFCNTTHETVKKKR--NELFEKELEMMLGRDIVLNENETKVNEIFMK 376
+L +L I ++ NT+ E V+K + N LF ++ E L++ K+NE K
Sbjct: 107 RLHHYLRKLITLRKAANTSREEVEKLQMENRLFREKEEKSSSEIKKLHQEIAKLNESMKK 166
Query: 377 LKTKELD 397
LK++ D
Sbjct: 167 LKSESED 173
>12_01_0398 -
3143745-3143777,3144045-3144126,3144863-3144975,
3145072-3145152,3145517-3145569,3146042-3146150,
3147512-3147571,3147689-3147771,3147913-3148086,
3148133-3148172
Length = 275
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = +2
Query: 317 LGRDIVLNENETK-VNEIFMKLKTKELDQGFRHRRPFVLSKHFFEYKDDVKKTELYKLIK 493
L R+ V N NE + + E+F K+ + +D G ++ F L+ KD + ++ L
Sbjct: 66 LARETVFNVNEIEALYELFKKISSAVVDDGLINKEEFQLALFKTNRKDSMFADRVFDLFD 125
Query: 494 KMPKG 508
G
Sbjct: 126 TKHNG 130
>08_02_1531 + 27674064-27674771
Length = 235
Score = 28.3 bits (60), Expect = 5.7
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 4/95 (4%)
Frame = +2
Query: 227 SIIMQAFCNTTHETVKKKRNELFEKELEMMLGRDIVLNENETKVNEIFMKLKT--KELDQ 400
S I + C +++ ++ +LF++E+E L + N +NE+F +LK+ ++L
Sbjct: 51 SSIEETMCLPSNQVCSSQQRKLFDREMEYSLELLDLCN----TMNEVFTELKSIIQDLQV 106
Query: 401 GFRHRRPFVLSKHFFEYKDDVKKTELY--KLIKKM 499
R V+ Y VKK + + K +KK+
Sbjct: 107 SLRKGDDAVVQAKIQSYIRLVKKAKKHSKKTVKKV 141
>10_01_0171 +
1917520-1918056,1919201-1919336,1921873-1922060,
1922491-1922694,1923913-1924425
Length = 525
Score = 27.9 bits (59), Expect = 7.6
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 186 ITSKFCCYIKRRSRSMGGGTP*RTISMLLLLERPAD 79
I SK CCY + S GGG R +M+ + PAD
Sbjct: 84 IQSK-CCYYTSSASSTGGGRGQRAWAMVAIWRPPAD 118
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,476,825
Number of Sequences: 37544
Number of extensions: 309945
Number of successful extensions: 805
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -