Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_K18
(659 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41108-2|AAQ23121.2| 639|Caenorhabditis elegans Tropomodulin pr... 30 1.3
Z98866-19|CAB11556.2| 259|Caenorhabditis elegans Hypothetical p... 30 1.7
Z31590-8|CAA83465.1| 812|Caenorhabditis elegans Hypothetical pr... 29 2.2
AF518559-1|AAM97343.1| 793|Caenorhabditis elegans inositol poly... 29 2.2
Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical p... 28 5.1
Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical pr... 28 5.1
Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue... 28 5.1
Z81114-5|CAB03287.1| 300|Caenorhabditis elegans Hypothetical pr... 28 6.8
U56961-1|AAK39295.1| 118|Caenorhabditis elegans Hypothetical pr... 28 6.8
U23516-9|AAG38884.1| 1203|Caenorhabditis elegans Hypothetical pr... 27 8.9
>U41108-2|AAQ23121.2| 639|Caenorhabditis elegans Tropomodulin
protein 2, isoform b protein.
Length = 639
Score = 30.3 bits (65), Expect = 1.3
Identities = 23/94 (24%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Frame = +2
Query: 272 KKKRNELFEKELEMMLGRDIVLNENETKVNEIFMKLKT-KELDQGFRHRRPFVLSKHFFE 448
+KK+ L +++ M D++ E + ++ ++ K K K+L+ HR+ F + + +
Sbjct: 480 EKKKPLLSIQKIREMEKNDVIKKEEDDRLEQLLKKEKEPKKLNN--EHRKLFE-NGNVAQ 536
Query: 449 YKDDVKKTELYKLIKKMPKGAVLHAHDTSLLGPD 550
K + ++ + KLI K P + T + GPD
Sbjct: 537 KKPEPRR-HVQKLIAKKPNSILNQTEPTKIEGPD 569
>Z98866-19|CAB11556.2| 259|Caenorhabditis elegans Hypothetical
protein Y49E10.22 protein.
Length = 259
Score = 29.9 bits (64), Expect = 1.7
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Frame = +2
Query: 212 VFLWLSIIMQAFCNTTHET-VKKKRNELFEKELEMMLGRDIVLNEN---ETKVNEIFMKL 379
+FL + I+ +A +H T ++K++NE K E M D +L + ET EI +++
Sbjct: 101 IFLKVGIV-EALRRNSHRTGIEKQKNETIRKIFEKMEDPDEILENSIVLETDEVEIDVEV 159
Query: 380 KTKELDQGFRHRRPFV 427
+L F ++P V
Sbjct: 160 VMNKLKFDFTAKKPIV 175
>Z31590-8|CAA83465.1| 812|Caenorhabditis elegans Hypothetical
protein R01H10.7 protein.
Length = 812
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 455 DDVKKTELYKLIKKMPKGAVLHAHDTSLLGPDYVL 559
D + +++L+ L+K + K A HA+ L+ D+VL
Sbjct: 495 DTILESQLFSLVKSLQKPATAHAYFHILIRTDFVL 529
>AF518559-1|AAM97343.1| 793|Caenorhabditis elegans inositol
polyphosphate-4-phosphataseprotein.
Length = 793
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 455 DDVKKTELYKLIKKMPKGAVLHAHDTSLLGPDYVL 559
D + +++L+ L+K + K A HA+ L+ D+VL
Sbjct: 476 DTILESQLFSLVKSLQKPATAHAYFHILIRTDFVL 510
>Z78200-10|CAN86608.1| 1312|Caenorhabditis elegans Hypothetical
protein T04H1.4b protein.
Length = 1312
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +2
Query: 269 VKKKRNE-LFEKELEMM-LGRDIVLNENETKVNEIFMKLKTKELDQGFRHRR 418
+ +KRNE L + + + L R++ E E K E+ +++ KELDQ HR+
Sbjct: 898 ISQKRNEDLPDAQFKKDDLTRNVSSKEEEKKKAEMEVQMMKKELDQKIFHRK 949
>Z78200-9|CAB01581.1| 1298|Caenorhabditis elegans Hypothetical protein
T04H1.4a protein.
Length = 1298
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +2
Query: 269 VKKKRNE-LFEKELEMM-LGRDIVLNENETKVNEIFMKLKTKELDQGFRHRR 418
+ +KRNE L + + + L R++ E E K E+ +++ KELDQ HR+
Sbjct: 884 ISQKRNEDLPDAQFKKDDLTRNVSSKEEEKKKAEMEVQMMKKELDQKIFHRK 935
>Z75312-1|CAA99730.1| 1298|Caenorhabditis elegans RAD50 homologue
ceRAD50 protein.
Length = 1298
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Frame = +2
Query: 269 VKKKRNE-LFEKELEMM-LGRDIVLNENETKVNEIFMKLKTKELDQGFRHRR 418
+ +KRNE L + + + L R++ E E K E+ +++ KELDQ HR+
Sbjct: 884 ISQKRNEDLPDAQFKKDDLTRNVSSKEEEKKKAEMEVQMMKKELDQKIFHRK 935
>Z81114-5|CAB03287.1| 300|Caenorhabditis elegans Hypothetical
protein T04D3.5 protein.
Length = 300
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 116 RFLCCFCWSGQPTRRLKT 63
R +C FC+ QPT RL T
Sbjct: 141 RMVCSFCYRAQPTHRLYT 158
>U56961-1|AAK39295.1| 118|Caenorhabditis elegans Hypothetical
protein T19D7.3 protein.
Length = 118
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 523 GMKHRTFWHFFNQLVQFSFLDIIFVFKEVFG 431
G+ H TF+ FF ++ FSF + F E+FG
Sbjct: 6 GLYHATFY-FFTIIIFFSFSPVNCQFLEIFG 35
>U23516-9|AAG38884.1| 1203|Caenorhabditis elegans Hypothetical
protein B0416.1 protein.
Length = 1203
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/64 (28%), Positives = 30/64 (46%)
Frame = +2
Query: 293 FEKELEMMLGRDIVLNENETKVNEIFMKLKTKELDQGFRHRRPFVLSKHFFEYKDDVKKT 472
F++E + +D +L + + K EI KL+ + + R V KH + + V K
Sbjct: 80 FDEEDDKEASKDRILKKIQQK-KEIIQKLRGQPWYMKRKRRTLKVAQKHLQQQEAKVSKA 138
Query: 473 ELYK 484
LYK
Sbjct: 139 RLYK 142
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,741,394
Number of Sequences: 27780
Number of extensions: 295278
Number of successful extensions: 855
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 855
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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