Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_K13
         (537 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces...   222   2e-59
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr...    27   1.3  
SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|c...    27   1.3  
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|...    27   1.3  
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb...    27   1.3  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    25   9.5  
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    25   9.5  

>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score =  222 bits (543), Expect = 2e-59
 Identities = 107/143 (74%), Positives = 119/143 (83%)
 Frame = +1

Query: 109 AELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRXIRELTSVVQKRFN 288
           AELNEF TREL+E+GYSG EVRVTP RSEIII AT TQ VLGEKGR IRELT++VQKRF 
Sbjct: 21  AELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLGEKGRRIRELTALVQKRFK 80

Query: 289 IPEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEXVV 468
             E +V LYAEKV  RGLCA+AQ ESLRYKL+ GLAVRRA YGVLR++ME+GA+GCE V+
Sbjct: 81  FAENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAYGVLRYVMEAGAKGCEVVI 140

Query: 469 SGXLRGQRAKSMKFVXGLMIHSG 537
           SG LR  RAKSMKF  G MIHSG
Sbjct: 141 SGKLRAARAKSMKFADGFMIHSG 163


>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 136

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 324 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 428
           GG   P RYRPG ++  +  R  + T  L+   PF
Sbjct: 34  GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68


>SPBC1604.07 |atp4||F0-ATPase subunit|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
 Frame = +2

Query: 131 LGSWPRTATPAWKCGSLPSARRSLLWP------PGHRVCSERKDAXSVSSLP 268
           L S+P     AW+   LPS R+  L P      P  R+  ++K A  +SS+P
Sbjct: 8   LRSFPSVQRTAWQRLVLPSTRKFSLTPTTFDKTPSGRIPPDQKAANIISSVP 59


>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 324 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 428
           GG   P RYRPG ++  +  R  + T  L+   PF
Sbjct: 34  GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68


>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 136

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +3

Query: 324 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 428
           GG   P RYRPG ++  +  R  + T  L+   PF
Sbjct: 34  GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 18/70 (25%), Positives = 31/70 (44%)
 Frame = -1

Query: 465 NXFTTTGTRFHDETENTIASTTYSETSDKLVS*RFGLGDSAKATSSHLFSIQXYRLLWNV 286
           N F+T      +  +    +T   + SD+ V     L + AK   S LFS+   ++  NV
Sbjct: 752 NLFSTAIYEVANNAKGLSRTTGDDQGSDRFVGLSRDLVNMAKRFLSSLFSVNTRKMDVNV 811

Query: 285 ESLLYYGSEL 256
           ++ L  G  +
Sbjct: 812 KTDLVIGENI 821


>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 170 CGSLPSARRSLLWP 211
           C +LPS + +L+WP
Sbjct: 87  CSTLPSVKSTLIWP 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,841,081
Number of Sequences: 5004
Number of extensions: 31843
Number of successful extensions: 68
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)