Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_K13
(537 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39851-9|AAF99870.1| 247|Caenorhabditis elegans Ribosomal prote... 238 2e-63
U40030-4|AAS80338.1| 909|Caenorhabditis elegans Hypothetical pr... 30 1.2
U40030-3|AAS80339.1| 911|Caenorhabditis elegans Hypothetical pr... 30 1.2
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ... 29 2.1
Z93388-9|CAB07653.1| 136|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z83245-7|CAB05834.1| 136|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z83245-3|CAB05833.1| 136|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z83245-2|CAB05831.1| 136|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z82271-1|CAB05209.1| 136|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z81495-3|CAB04057.1| 136|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z73102-11|CAA97411.1| 136|Caenorhabditis elegans Hypothetical p... 29 2.8
Z68336-2|CAA92733.1| 136|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical pr... 29 2.8
X15634-2|CAA33644.1| 136|Caenorhabditis elegans Histone protein... 29 2.8
U64845-9|AAC48033.1| 136|Caenorhabditis elegans Histone protein... 29 2.8
U64843-9|AAF98226.1| 136|Caenorhabditis elegans Histone protein... 29 2.8
U64843-4|AAF98231.1| 136|Caenorhabditis elegans Histone protein... 29 2.8
U58750-10|AAB00650.1| 136|Caenorhabditis elegans Histone protei... 29 2.8
AF304122-1|AAG50235.1| 136|Caenorhabditis elegans histone H3 pr... 29 2.8
AF047656-3|AAC05102.1| 136|Caenorhabditis elegans Histone prote... 29 2.8
AC024696-4|AAK84514.1| 136|Caenorhabditis elegans Histone prote... 29 2.8
Z98866-6|CAB11546.1| 136|Caenorhabditis elegans Hypothetical pr... 27 6.5
U28732-2|AAB04902.1| 136|Caenorhabditis elegans Histone protein... 27 6.5
Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical pr... 27 8.6
>U39851-9|AAF99870.1| 247|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 3 protein.
Length = 247
Score = 238 bits (582), Expect = 2e-63
Identities = 119/163 (73%), Positives = 133/163 (81%), Gaps = 1/163 (0%)
Frame = +1
Query: 52 MAVN-NISXXXXXXXXXXXXAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSV 228
MA N N++ AELN FL +ELAEDGYSGVEVR TP R+E+IIMATRTQ+V
Sbjct: 1 MAANQNVTKKKKAVIGGIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNV 60
Query: 229 LGEKGRXIRELTSVVQKRFNIPEQSVXLYAEKVATRGLCAIAQAESLRYKLIGGLAVRRA 408
LGE+GR I+ELTSVVQKRF E SV LYAEKV+ RGLCA+AQ ESLRYKL+GGLAVRRA
Sbjct: 61 LGERGRRIKELTSVVQKRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRA 120
Query: 409 CYGVLRFIMESGARGCEXVVSGXLRGQRAKSMKFVXGLMIHSG 537
CYGVLRFIMESGA+G E +VSG LRGQRAK+MKFV GLMIHSG
Sbjct: 121 CYGVLRFIMESGAQGVEVIVSGKLRGQRAKAMKFVDGLMIHSG 163
>U40030-4|AAS80338.1| 909|Caenorhabditis elegans Hypothetical
protein T13C2.6a protein.
Length = 909
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 215 GHRVCSERKDAXSVSSLP*YRSDSTFQSNLXNCMLKRWL 331
G R C+ KD + +S D+ FQ + NC+ K W+
Sbjct: 146 GQRDCTNGKDEQNCTSKTSKCPDNNFQCSNGNCIFKNWV 184
>U40030-3|AAS80339.1| 911|Caenorhabditis elegans Hypothetical
protein T13C2.6b protein.
Length = 911
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 215 GHRVCSERKDAXSVSSLP*YRSDSTFQSNLXNCMLKRWL 331
G R C+ KD + +S D+ FQ + NC+ K W+
Sbjct: 148 GQRDCTNGKDEQNCTSKTSKCPDNNFQCSNGNCIFKNWV 186
>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
protein Y18D10A.1 protein.
Length = 1634
Score = 29.1 bits (62), Expect = 2.1
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +1
Query: 217 TQSVLGEKGRXIRELTSVVQKRFNIPEQSVXLYAEKVATR 336
+ S+ G+KG+ +REL + + K ++ E++ + AE A R
Sbjct: 396 SSSIHGKKGKTVRELQTEMMKGESVKEKAARMRAEASAGR 435
>Z93388-9|CAB07653.1| 136|Caenorhabditis elegans Hypothetical
protein T10C6.13 protein.
Length = 136
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 324 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 428
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z83245-7|CAB05834.1| 136|Caenorhabditis elegans Hypothetical
protein ZK131.7 protein.
Length = 136
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 324 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 428
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z83245-3|CAB05833.1| 136|Caenorhabditis elegans Hypothetical
protein ZK131.3 protein.
Length = 136
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 324 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 428
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z83245-2|CAB05831.1| 136|Caenorhabditis elegans Hypothetical
protein ZK131.2 protein.
Length = 136
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 324 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 428
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z82271-1|CAB05209.1| 136|Caenorhabditis elegans Hypothetical
protein F54E12.1 protein.
Length = 136
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 324 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 428
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z81495-3|CAB04057.1| 136|Caenorhabditis elegans Hypothetical
protein F08G2.3 protein.
Length = 136
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 324 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 428
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z73102-11|CAA97411.1| 136|Caenorhabditis elegans Hypothetical
protein B0035.10 protein.
Length = 136
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 324 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 428
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z68336-2|CAA92733.1| 136|Caenorhabditis elegans Hypothetical
protein F22B3.2 protein.
Length = 136
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 324 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 428
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical
protein M88.5b protein.
Length = 704
Score = 28.7 bits (61), Expect = 2.8
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +1
Query: 139 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRXIRELTSVVQKRFNIPEQ 300
L G G + IR+E+ + ++G+ G+ +REL + IPE+
Sbjct: 543 LPSSGMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPEE 596
>Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical
protein M88.5a protein.
Length = 828
Score = 28.7 bits (61), Expect = 2.8
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +1
Query: 139 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRXIRELTSVVQKRFNIPEQ 300
L G G + IR+E+ + ++G+ G+ +REL + IPE+
Sbjct: 667 LPSSGMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPEE 720
>X15634-2|CAA33644.1| 136|Caenorhabditis elegans Histone protein
protein.
Length = 136
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 324 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 428
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>U64845-9|AAC48033.1| 136|Caenorhabditis elegans Histone protein 6
protein.
Length = 136
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 324 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 428
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>U64843-9|AAF98226.1| 136|Caenorhabditis elegans Histone protein 17
protein.
Length = 136
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 324 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 428
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>U64843-4|AAF98231.1| 136|Caenorhabditis elegans Histone protein 27
protein.
Length = 136
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 324 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 428
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>U58750-10|AAB00650.1| 136|Caenorhabditis elegans Histone protein
59 protein.
Length = 136
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 324 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 428
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>AF304122-1|AAG50235.1| 136|Caenorhabditis elegans histone H3
protein.
Length = 136
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 324 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 428
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>AF047656-3|AAC05102.1| 136|Caenorhabditis elegans Histone protein
32 protein.
Length = 136
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 324 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 428
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>AC024696-4|AAK84514.1| 136|Caenorhabditis elegans Histone protein
49 protein.
Length = 136
Score = 28.7 bits (61), Expect = 2.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 324 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 428
GG P RYRPG ++ + R + T L+ +PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPF 68
>Z98866-6|CAB11546.1| 136|Caenorhabditis elegans Hypothetical
protein Y49E10.6 protein.
Length = 136
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 324 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 428
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>U28732-2|AAB04902.1| 136|Caenorhabditis elegans Histone protein 71
protein.
Length = 136
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 324 GGYSWPLRYRPGRISKIQAYRRSRCTSCLLWCSPF 428
GG P RYRPG ++ + R + T L+ PF
Sbjct: 34 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPF 68
>Z81110-5|CAN86897.1| 2882|Caenorhabditis elegans Hypothetical protein
T01D3.7 protein.
Length = 2882
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -1
Query: 492 TLTTQXARYNXFTTTGTRFHDETENTIASTTYSET 388
T+T+ A TTT + ++ T+ +IAS+T T
Sbjct: 2706 TMTSPDATLPILTTTSSEYYTSTQESIASSTSEVT 2740
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,234,791
Number of Sequences: 27780
Number of extensions: 182122
Number of successful extensions: 470
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 455
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -