Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_K08
(629 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz... 283 1e-77
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz... 282 3e-77
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar... 57 2e-09
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 29 0.55
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom... 27 2.2
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom... 27 3.0
SPAC1002.06c |bqt2|mug18, rec23|bouquet formation protein Bqt2|S... 27 3.0
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 26 5.2
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 25 9.0
>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 192
Score = 283 bits (695), Expect = 1e-77
Identities = 131/176 (74%), Positives = 152/176 (86%)
Frame = +3
Query: 93 RPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAL 272
RPFE ARLD ELK+ GEYGLRNK E+WRV TL++IR+AARELLTL+EKDPKRLFEGNA+
Sbjct: 17 RPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFEGNAI 76
Query: 273 LRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRV 452
+RRLVR+G+LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHHAR+LI QRHIRV
Sbjct: 77 IRRLVRLGILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRV 136
Query: 453 RKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPXRVKRKNLRKGQGGGAANDEXED 620
KQ+VN+PSF+VRLD+ KHIDF+L SP+GGGRP R KRK LR Q GG + E+
Sbjct: 137 GKQIVNVPSFVVRLDAQKHIDFALSSPYGGGRPGRCKRKRLRSQQEGGEGEEAEEE 192
>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 191
Score = 282 bits (691), Expect = 3e-77
Identities = 131/175 (74%), Positives = 151/175 (86%)
Frame = +3
Query: 93 RPFEKARLDQELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNAL 272
RPFE ARLD ELK+ GEYGLRNK E+WRV TL++IR+AARELLTL+EKDPKRLFEGNA+
Sbjct: 17 RPFESARLDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFEGNAI 76
Query: 273 LRRLVRIGVLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRV 452
+RRLVR+G+LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHHAR+LI QRHIRV
Sbjct: 77 IRRLVRLGILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRV 136
Query: 453 RKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPXRVKRKNLRKGQGGGAANDEXE 617
KQ+VN+PSF+VRLD+ KHIDF+L SP+GGGRP R KRK LR +GG E E
Sbjct: 137 GKQIVNVPSFVVRLDTQKHIDFALSSPYGGGRPGRCKRKRLRSQEGGEGEEAEEE 191
>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 57.2 bits (132), Expect = 2e-09
Identities = 32/123 (26%), Positives = 57/123 (46%)
Frame = +3
Query: 120 QELKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGV 299
+++ ++ Y + + E + + R+ A L L+ DP RL N LL +L +G+
Sbjct: 28 RDVMVMRRYHISKREEYQKYNIICGKFRQLAHRLSLLDPTDPFRLQYENLLLEKLFDMGI 87
Query: 300 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 479
L K D + RRL + K +++ + A LI Q H+RV V+ P+
Sbjct: 88 LPSKSKMSDIENKANVSAICRRRLPVIMCKLRMSQVVSEATRLIEQGHVRVGPHVITDPA 147
Query: 480 FIV 488
++V
Sbjct: 148 YLV 150
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 29.1 bits (62), Expect = 0.55
Identities = 18/44 (40%), Positives = 20/44 (45%)
Frame = +2
Query: 344 D*GLLGASSADAGVQSWPGEVHPSCQNFDPAKAYSCPQASCEHP 475
D GLLGA+S GVQS PG P P + P S P
Sbjct: 1521 DYGLLGAASPYKGVQS-PGYTSPFSSAMSPGYGLTSPSYSPSSP 1563
>SPBC3B9.09 |vps36||RBZ zinc finger protein
Vps36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 467
Score = 27.1 bits (57), Expect = 2.2
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = -1
Query: 119 VKTCLFKRTIEVSRTSLKIPTGTLLFTILASSHA 18
VK C ++EV T+ K+ +G +LF + S+H+
Sbjct: 357 VKACELIDSMEVGITTSKMNSGLILFQLKTSNHS 390
>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 26.6 bits (56), Expect = 3.0
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +3
Query: 315 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 446
+++D L + +E FL++ TQ+ +A I + I Q H+
Sbjct: 132 VRMDGALWMAVEQFLQQEFDTQILPCLIAPEILLEFLKIWQNHV 175
>SPAC1002.06c |bqt2|mug18, rec23|bouquet formation protein
Bqt2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 118
Score = 26.6 bits (56), Expect = 3.0
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -2
Query: 88 RCHVRL*KYRQVLCCSPSWRA 26
R HVRL Y+ V C SP W A
Sbjct: 47 RKHVRLPNYKSVQCRSPWWIA 67
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 25.8 bits (54), Expect = 5.2
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = -1
Query: 176 APYFTL--VAETVLSDDLQLLVKTCLFKRTIEVSRTSLKIPTGTLL 45
+P++ L + E +SD L + +C F IE+S S P+GT++
Sbjct: 431 SPFWKLDNLQEEKISDVLFSKISSCCFAHDIEISENS--TPSGTMV 474
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 25.0 bits (52), Expect = 9.0
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +3
Query: 174 RVKYTLARIRKAARELLTLEEKDPKRLFEGNALLRRLVRIGVLDEKQMKLDYVLGL 341
R++YT R+R AR+ LT LF + L+ + +L++KQ + +L L
Sbjct: 1566 RLEYTALRLRSYARKTLT-NSASQNALF---SFLKANFDVALLEQKQTETSNLLRL 1617
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,528,198
Number of Sequences: 5004
Number of extensions: 50812
Number of successful extensions: 141
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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