Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_K07
         (482 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomy...   186   2e-48
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    26   2.6  
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos...    25   6.0  
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    25   7.9  
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb...    25   7.9  
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo...    25   7.9  
SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase |Schizo...    25   7.9  

>SPAC806.07 |ndk1||nucleoside diphosphate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 151

 Score =  186 bits (452), Expect = 2e-48
 Identities = 83/147 (56%), Positives = 107/147 (72%)
 Frame = +3

Query: 30  ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 209
           E+TFI VKPD VQRGL+G II +FE KG+KL  LKF+ PS +L+++HY++   +PF+  L
Sbjct: 4   EQTFIAVKPDAVQRGLIGYIISKFELKGYKLRALKFLVPSRDLVEEHYAEHKGKPFYEKL 63

Query: 210 XKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPXDSQPGTIRGDLCIQVGRNIIHGSDSVE 389
             +M+SGPV  M+WEG   VKTGR MLGA+NP DS PGTIRGD  I +GRN+ HGSDS+E
Sbjct: 64  VGFMASGPVCAMIWEGKQAVKTGRLMLGASNPLDSAPGTIRGDYGIDLGRNVCHGSDSIE 123

Query: 390 SAKKEIXLWFTDKEVVGWTPANENWVY 470
           SA +EI LWF   E+  +    E W+Y
Sbjct: 124 SANREIKLWFQPSEIQVYDRTIEPWIY 150


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 115 KPFFSKRSIMVPTRPRCTPSGLT 47
           KPF +KRS ++P RP  T   L+
Sbjct: 512 KPFVNKRSKVLPLRPSVTHDNLS 534


>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
           Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 953

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = -2

Query: 304 GLVAPSI*RPVFTTLRPSHTIGTTGPELMYFXRPGKKGR 188
           G + P   RP  T+L P  T+ TT   +    RP  K +
Sbjct: 359 GSLTPLSSRPAHTSLPPIPTVQTTSSNVPPVNRPSLKSK 397


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -1

Query: 470 INPVFICRCPAHNFFVRKPEXYFLFSRF 387
           INPVF  R PAH     K +  F+ S F
Sbjct: 73  INPVFDPRKPAHELKGNKRDNTFVTSLF 100


>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
 Frame = +3

Query: 237 VPMVWEGLNVVKTGRQMLGATNPXDSQPGTIRGDLCIQVGRNI----IHGSDSVESAKKE 404
           +  V EG N +  GRQ+L  T+P           + + +G  I     H SD +   + +
Sbjct: 388 ITWVSEGANTMDRGRQLLEVTHPRGRLDAGTMSTMGVGMGYAIASAFAHSSDKIVVVEGD 447

Query: 405 IXLWFTDKEV 434
               F+  E+
Sbjct: 448 SAFGFSAMEL 457


>SPAC1039.07c |||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = +3

Query: 255 GLNVVKTGRQMLGATNPXDSQP--GTIRGDLCIQVGR--NIIH 371
           GL +++ G ++   T+P       GT+ GD C+++G   NI+H
Sbjct: 364 GLGLLQ-GIEIASCTDPSKPSDFLGTVIGDKCLELGMNCNIVH 405


>SPBC428.14 |||1-acylglycerol-3-phosphate acyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 350

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = -1

Query: 161 EKFF*WPYE--FQTD*FEAFLFETFNNGAHKTTLYTIRLNHNKSTLTLF 21
           ++F  W Y+  ++ D     L ET N    K    T+RL H    L+LF
Sbjct: 283 DQFTDWLYQRWYEKDKLIDTLLETGNFPGPKKLHTTVRLKHRLEILSLF 331


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,926,912
Number of Sequences: 5004
Number of extensions: 36044
Number of successful extensions: 97
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)