Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_K07
(482 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0347 - 29440541-29440664,29440908-29441020,29441522-294416... 208 2e-54
07_03_0445 - 18281715-18281832,18282274-18282505,18283486-182835... 194 3e-50
10_08_0945 - 21738643-21738760,21740056-21740287,21740582-217406... 194 4e-50
12_02_0695 + 22220054-22220056,22221226-22221276,22221415-222215... 192 2e-49
10_08_1046 + 22542074-22544749,22544837-22545544 28 4.5
07_03_0810 - 21674710-21674960,21675318-21675405,21675739-216759... 28 4.5
03_01_0016 + 131141-131236,131743-132043,132125-132341,132440-13... 27 6.0
01_06_0319 - 28441082-28441102,28441630-28441701,28442568-284426... 27 6.0
01_03_0131 - 12858377-12858664,12859585-12859975,12863357-128633... 27 6.0
08_01_0455 + 4012857-4013735 27 7.9
05_01_0429 + 3399266-3399708,3401320-3401382,3403919-3404345,340... 27 7.9
>05_07_0347 -
29440541-29440664,29440908-29441020,29441522-29441689,
29442341-29442391,29442518-29442555,29442885-29442978
Length = 195
Score = 208 bits (507), Expect = 2e-54
Identities = 92/151 (60%), Positives = 115/151 (76%)
Frame = +3
Query: 18 AEQRERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPF 197
A + ERTFI +KPDGVQRGL+ I+ RFE+KGFKLV +K V PS+E Q+HY DL RPF
Sbjct: 42 AAEMERTFIAIKPDGVQRGLISEILSRFERKGFKLVAIKLVVPSKEFAQKHYHDLKDRPF 101
Query: 198 FPGLXKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPXDSQPGTIRGDLCIQVGRNIIHGS 377
F GL ++SSGPV+ MVWEG V+K GR+++GAT+P S+PGTIRGDL + VGRNIIHGS
Sbjct: 102 FNGLCDFLSSGPVLAMVWEGEGVIKYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGS 161
Query: 378 DSVESAKKEIXLWFTDKEVVGWTPANENWVY 470
D E+AK EI LWF +E+V +T E W+Y
Sbjct: 162 DGPETAKAEIGLWFEPRELVSYTSNEEKWIY 192
>07_03_0445 -
18281715-18281832,18282274-18282505,18283486-18283534,
18283733-18283783
Length = 149
Score = 194 bits (473), Expect = 3e-50
Identities = 86/147 (58%), Positives = 111/147 (75%)
Frame = +3
Query: 30 ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 209
E++FIM+KPDGVQRGL+G II RFEKKGF L G+KF+ QQHY+DL+ +PFFPGL
Sbjct: 2 EQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGL 61
Query: 210 XKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPXDSQPGTIRGDLCIQVGRNIIHGSDSVE 389
+Y+ SGPVV MVWEG +VV TGR+++GAT P ++ PGTIR D ++VGRN+IHGSDSV+
Sbjct: 62 VEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGSDSVD 121
Query: 390 SAKKEIXLWFTDKEVVGWTPANENWVY 470
+ KKEI LWF + + W W+Y
Sbjct: 122 NGKKEIALWFPE-GLAEWRSNLHPWIY 147
>10_08_0945 -
21738643-21738760,21740056-21740287,21740582-21740630,
21740720-21740776
Length = 151
Score = 194 bits (472), Expect = 4e-50
Identities = 84/147 (57%), Positives = 111/147 (75%)
Frame = +3
Query: 30 ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 209
E+TFIM+KPDGVQRGL+G +I RFEKKGF L +K + + ++HY+DL+S+PFF GL
Sbjct: 4 EQTFIMIKPDGVQRGLIGEVIGRFEKKGFYLKAMKLINVEKSFAEKHYADLSSKPFFGGL 63
Query: 210 XKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPXDSQPGTIRGDLCIQVGRNIIHGSDSVE 389
+Y+ SGPVV MVWEG VV TGR+++GATNP ++PGTIRGD + +GRN+IHGSDSVE
Sbjct: 64 VEYIVSGPVVAMVWEGKQVVSTGRKLVGATNPLAAEPGTIRGDFAVDIGRNVIHGSDSVE 123
Query: 390 SAKKEIXLWFTDKEVVGWTPANENWVY 470
+A+KEI LWF + + W W+Y
Sbjct: 124 NARKEIALWFPE-GIAEWRSNQHPWIY 149
>12_02_0695 +
22220054-22220056,22221226-22221276,22221415-22221501,
22222064-22222144,22222241-22222353,22222482-22222531,
22222790-22222857
Length = 150
Score = 192 bits (467), Expect = 2e-49
Identities = 83/146 (56%), Positives = 109/146 (74%)
Frame = +3
Query: 30 ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 209
E+++IM+KPDGVQRGLVG II RFEKKGF L GLK ++L Q+HY DL +PFFPGL
Sbjct: 3 EQSYIMIKPDGVQRGLVGEIISRFEKKGFVLKGLKLFQCPKDLAQEHYKDLKEKPFFPGL 62
Query: 210 XKYMSSGPVVPMVWEGLNVVKTGRQMLGATNPXDSQPGTIRGDLCIQVGRNIIHGSDSVE 389
+Y++SGPVV M WEG VV + R+++GATNP ++PGTIRGDL +Q GRN++HGSDS +
Sbjct: 63 IEYITSGPVVCMAWEGNGVVASARKLIGATNPLQAEPGTIRGDLAVQTGRNVVHGSDSPD 122
Query: 390 SAKKEIXLWFTDKEVVGWTPANENWV 467
+ K+EI LWF + E+ W W+
Sbjct: 123 NGKREIALWFKEGELCEWESVLTPWL 148
>10_08_1046 + 22542074-22544749,22544837-22545544
Length = 1127
Score = 27.9 bits (59), Expect = 4.5
Identities = 20/70 (28%), Positives = 30/70 (42%)
Frame = +3
Query: 30 ERTFIMVKPDGVQRGLVGTIIERFEKKGFKLVGLKFVWPSEELLQQHYSDLASRPFFPGL 209
ER +VK +G G FE KG G +WP ++ + H +L S+P+ P
Sbjct: 195 ERRLSLVKQNGGAPGEFDHNRWLFETKGTYGYG-NAIWPEDDGVAGHPKELMSKPWRPLT 253
Query: 210 XKYMSSGPVV 239
K V+
Sbjct: 254 RKLRIQAAVI 263
>07_03_0810 -
21674710-21674960,21675318-21675405,21675739-21675990,
21676521-21676685,21677358-21678494
Length = 630
Score = 27.9 bits (59), Expect = 4.5
Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Frame = -1
Query: 443 PAHNFFVRKPEXYFLFSRFNAVRTMDD-VTPNLNAEITADSAGLRVXWVSCAKHLTASLH 267
P F + E + ++ RFN T+DD + P+L S GL + A +LH
Sbjct: 217 PPSGVFAKLRELHLVYVRFNGELTLDDAMLPSLEWLDIGKSRGLASLTLRLAPLTLMALH 276
Query: 266 NIKAL 252
+++ L
Sbjct: 277 DMRWL 281
>03_01_0016 + 131141-131236,131743-132043,132125-132341,132440-132773,
132883-132996,133065-133193,133293-133469,133555-133746,
134844-134981,135327-135559,135900-136003,136633-136727,
136817-137053,137801-137922,138252-138354,138750-138826,
138909-139017,139107-139253,139953-140000,140292-140492,
140589-140738,140917-141002,141088-141193,141278-141373,
141759-141911,142647-142819,142923-142986,144056-144193,
144548-144595,144690-144836,144907-144968,146540-146645,
147357-147461,147548-147679,147765-147974,148070-148171,
148261-148398
Length = 1729
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = -3
Query: 183 PNRCSVAGEVLLMAIRISNR 124
PN+CS+ ++LL+A+RI R
Sbjct: 1388 PNKCSLLPKILLVAVRIIQR 1407
>01_06_0319 -
28441082-28441102,28441630-28441701,28442568-28442627,
28442918-28443105,28444300-28444327,28444880-28444907,
28444942-28445163,28445238-28445409,28446224-28447468,
28447573-28447741,28447820-28448045,28449096-28449451,
28449530-28449724,28450655-28450864,28451729-28452004
Length = 1155
Score = 27.5 bits (58), Expect = 6.0
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Frame = -2
Query: 280 RPVFTTLRPSHTIGTTGPELMYFXRPGKKGRDAKSL*CCWRS--SSDGHTNFKPTSLKP 110
RP S+T + P+ RPGK+G DA+S+ S S T +P S KP
Sbjct: 529 RPFCPCASRSNTDASLHPQTENGSRPGKRGNDAESVPGTNGSDLSQTDDTEARPCSKKP 587
>01_03_0131 -
12858377-12858664,12859585-12859975,12863357-12863397,
12864745-12865419
Length = 464
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 104 FETFNNGAHKTTLYTIRLNHNKSTL 30
+ F +K T+YT+RL+HN+ L
Sbjct: 421 YRAFTWAEYKRTMYTLRLSHNRLDL 445
>08_01_0455 + 4012857-4013735
Length = 292
Score = 27.1 bits (57), Expect = 7.9
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = -3
Query: 102 RNVQ*WCPQDHVVHHQA 52
R V WCPQD V+ H+A
Sbjct: 166 RCVATWCPQDRVLRHRA 182
>05_01_0429 +
3399266-3399708,3401320-3401382,3403919-3404345,
3404863-3405141
Length = 403
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = -1
Query: 104 FETFNNGAHKTTLYTIRLNHNKSTLTLFR 18
+ +F +KTT+Y++RL+H S L LF+
Sbjct: 363 YRSFTWAEYKTTMYSLRLSH--SRLELFK 389
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,895,918
Number of Sequences: 37544
Number of extensions: 247320
Number of successful extensions: 642
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -