Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_J20
         (418 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.08c |||mitochondrial ribosomal protein subunit Yml6|Sch...    25   4.7  
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc...    25   6.2  
SPBC354.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   6.2  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    24   8.2  

>SPBC2D10.08c |||mitochondrial ribosomal protein subunit
           Yml6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 261

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 338 HRQLGKCHRRIDDSPAPLLR*GAPXCG 418
           +RQ G  H R+ D+ +P+ R GA   G
Sbjct: 70  YRQKGTGHARVGDASSPIRRGGAKSHG 96


>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 615

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 368 CDDDIFQVAGEFTLEFANQVLAIVSLEGL 282
           C  D+ +  G FTLE AN+ + +  L G+
Sbjct: 552 CFVDLLRNCGAFTLEEANEYINLGILNGM 580


>SPBC354.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 163

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +3

Query: 258 IVQRLEIAETFKTNYGKD-LISELKS-ELTGNLENVIVALMTPLPH 389
           +V R+E+  +F  ++ +  L+S ++      NL  V + ++TPLPH
Sbjct: 60  VVNRIELMTSFDFDHVQQILLSAVQPYPYDKNLMFVYLVILTPLPH 105


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 225 KAIIDVLCRRGIVQRLEIAETF 290
           K I+++L +RG+V+ L   ETF
Sbjct: 628 KEIVEILFQRGLVKVLFATETF 649


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,389,114
Number of Sequences: 5004
Number of extensions: 20874
Number of successful extensions: 63
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)