Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_J20
         (418 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   7.4  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    20   9.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    20   9.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   9.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -3

Query: 167 VERLRGVXPWGCTCK 123
           VE   G  PW C CK
Sbjct: 917 VELSLGSNPWSCRCK 931


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 108 PLMLRFFCLTATHPTTQ 58
           P +LR+F   AT+P  Q
Sbjct: 830 PNLLRYFASIATNPKEQ 846


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = +3

Query: 312 LISELKSELTGNLENVI 362
           ++ E + E+TG ++N+I
Sbjct: 347 IVHEKQQEITGLIQNII 363


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = +3

Query: 312 LISELKSELTGNLENVI 362
           ++ E + E+TG ++N+I
Sbjct: 385 IVHEKQQEITGLIQNII 401


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 56   SCVVGCVAVKQKN 94
            SC  GC AV+ K+
Sbjct: 1710 SCASGCTAVETKS 1722


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,418
Number of Sequences: 438
Number of extensions: 1649
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)