Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_J19
(653 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun... 142 4e-35
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 27 3.1
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 5.5
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 25 7.2
SPBC646.14c |orc5||origin recognition complex subunit Orc5|Schiz... 25 9.5
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr... 25 9.5
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p... 25 9.5
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 25 9.5
>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 214
Score = 142 bits (344), Expect = 4e-35
Identities = 79/182 (43%), Positives = 99/182 (54%), Gaps = 1/182 (0%)
Frame = +2
Query: 110 LNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAP-AANLPHVLRWYNQIASYTSAERKTW 286
L LN +L +KS++ GY PSQAD VF+ VG AP A P+ RWY QIA+Y A
Sbjct: 12 LKQLNDFLLDKSFIEGYEPSQADAVVFKAVGVAPDTAKYPNGARWYKQIATYDLA----- 66
Query: 287 SQGTSPLXXXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXXXXXXXLKAYADKKSKK 466
T P +DLFGS + Y KK+ K
Sbjct: 67 ---TLPGTAKEVSAYGPEGAAAAEEDEIDLFGSDEEEDPEAERIKAERVAE-YNKKKAAK 122
Query: 467 PALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVI 646
P + KS + LDVKPWDDET M E+E VR+I+M+GL+WG SKLVPVG+G+NK QI V+
Sbjct: 123 PKAVHKSLVTLDVKPWDDETPMDELEKAVRSIQMDGLVWGLSKLVPVGFGVNKFQINLVV 182
Query: 647 ED 652
ED
Sbjct: 183 ED 184
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = -2
Query: 595 FGGSPEKXFHFNSAYLVFHFLHIGFIIP-WLDIKENR 488
FG S HF+ Y VF IG I P W++ N+
Sbjct: 485 FGNSYYNDHHFHYGYFVFTAAVIGHIDPDWINTGNNK 521
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 25.8 bits (54), Expect = 5.5
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
Frame = -1
Query: 248 DYTIVVRGEG*RPAPCQLAQILEHQLEK----ECIQTRSFSQLNIGSSH*XPWAVLTSPT 81
+Y +VV G G P C + L QLE E + F + ++ P A L S
Sbjct: 308 NYPVVVNGNGVNPYLCDVQAFLTSQLEYYFSIENLCKDMFLRKHMDDEGYVPLAFLASFN 367
Query: 80 AIVSFS 63
I SFS
Sbjct: 368 RIKSFS 373
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +3
Query: 309 PPVLNPRLPPQQRKTTMTT 365
PPVL P LPP Q T T+
Sbjct: 449 PPVLLPTLPPIQTTTIQTS 467
>SPBC646.14c |orc5||origin recognition complex subunit
Orc5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 455
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +2
Query: 110 LNDLNQYLAEKSYVSGYTPSQADVQVF 190
L+ +++YL ++++ Y PS+ D Q F
Sbjct: 300 LSLVSKYLLVSAFLASYNPSRLDAQFF 326
>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
2|||Manual
Length = 667
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -2
Query: 298 GALRPCFAFSRSV*SNLIIPS*YVGKVSGRRLANLLK 188
G L F ++ + +I+PS +G GR + LLK
Sbjct: 394 GLLLTSATFGAAIPTGIIVPSLAIGACIGRAVGTLLK 430
>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 404
Score = 25.0 bits (52), Expect = 9.5
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Frame = +3
Query: 240 GIIKLLHTLRLNAKHGLRAPAH*PPVLNPRL--------PPQQRKTTMTTTLIYLVLVTR 395
GI+ LR+N KH LR H V+N L K +L+ V +
Sbjct: 15 GILLSFEQLRINFKHILRHLEHESHVINSTLTTLISQENASMDEKIEKIDSLLSRVSTVK 74
Query: 396 KRMQKLNEFEKNV*KHMLTRSL 461
K+M+ L++ E K +R L
Sbjct: 75 KKMKHLHDCEALFIKQTKSRLL 96
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 449 DKKSKKPALIAKSSILLDVKPWDDETDMKEME 544
DK+S P LIA++ + ++ D+ +KE E
Sbjct: 692 DKESNSPVLIAETRLFNNLFKCDNPAALKEQE 723
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,457,213
Number of Sequences: 5004
Number of extensions: 45359
Number of successful extensions: 122
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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