Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_J19
         (653 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L25599-6|AAA28051.1|  213|Caenorhabditis elegans Hypothetical pr...   164   4e-41
Z95559-20|CAB63360.2|  263|Caenorhabditis elegans Hypothetical p...   115   3e-26
Z71177-2|CAA94867.1|  425|Caenorhabditis elegans Hypothetical pr...    32   0.41 
Z78065-3|CAB01517.2|  406|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z71177-9|CAA94868.2|  425|Caenorhabditis elegans Hypothetical pr...    29   3.8  
U42835-6|AAA83589.2|  816|Caenorhabditis elegans Dehydrogenases,...    29   3.8  
Z81127-9|CAB03394.3|  735|Caenorhabditis elegans Hypothetical pr...    27   8.8  
Z81056-11|CAB02911.3|  735|Caenorhabditis elegans Hypothetical p...    27   8.8  
Z68160-4|CAA92292.1|  583|Caenorhabditis elegans Hypothetical pr...    27   8.8  

>L25599-6|AAA28051.1|  213|Caenorhabditis elegans Hypothetical
           protein F54H12.6 protein.
          Length = 213

 Score =  164 bits (399), Expect = 4e-41
 Identities = 88/187 (47%), Positives = 113/187 (60%), Gaps = 3/187 (1%)
 Frame = +2

Query: 101 PRXLNDLNQYLAEKSYVSGYTPSQADVQVFEQVGKAP-AANLPHVLRWYNQIASYTSAER 277
           P  L   N  LAE+++ +G+  S  D Q+F  +G AP A+  P+V RWY  +ASYT AER
Sbjct: 8   PAGLAAFNTTLAEQAFATGFVLSGEDAQLFAALGSAPNASTYPNVARWYANVASYTDAER 67

Query: 278 KTWSQ--GTSPLXXXXXXXXXXXXXXXXXXXXVDLFGSGXXXXXXXXXXXXXXXLKAYAD 451
           KTW+   G++P                      DLFGS                L AYA+
Sbjct: 68  KTWASAGGSAPAAAAADGDDF------------DLFGSDDEEEDAEKAKIVEERLAAYAE 115

Query: 452 KKSKKPALIAKSSILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQ 631
           KK+KK   IAKSS++LDVKPWDDETD+ EME  VR+IEM+GL+WG +KL+P+GYGI KLQ
Sbjct: 116 KKAKKAGPIAKSSVILDVKPWDDETDLGEMEKLVRSIEMDGLVWGGAKLIPIGYGIKKLQ 175

Query: 632 IMCVIED 652
           I+ VIED
Sbjct: 176 IITVIED 182


>Z95559-20|CAB63360.2|  263|Caenorhabditis elegans Hypothetical
           protein Y41E3.10a protein.
          Length = 263

 Score =  115 bits (277), Expect = 3e-26
 Identities = 55/94 (58%), Positives = 66/94 (70%)
 Frame = +2

Query: 371 DLFGSGXXXXXXXXXXXXXXXLKAYADKKSKKPALIAKSSILLDVKPWDDETDMKEMENQ 550
           DLFGS                L AYA KK+ K   IAKSS++LDVKPWDDETD+ EME  
Sbjct: 139 DLFGSEDEEEDEEKKKVVEERLAAYAAKKATKAGPIAKSSVILDVKPWDDETDLGEMEKL 198

Query: 551 VRTIEMEGLLWGASKLVPVGYGINKLQIMCVIED 652
           VR+IEM+GL+WG +KL+P+GYGI KLQI+ VIED
Sbjct: 199 VRSIEMDGLVWGGAKLIPIGYGIKKLQIITVIED 232


>Z71177-2|CAA94867.1|  425|Caenorhabditis elegans Hypothetical
           protein AC3.3 protein.
          Length = 425

 Score = 31.9 bits (69), Expect = 0.41
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -1

Query: 293 PETMFCVQPKCMKQFDYTIVVRGEG*RPAPCQLAQILEHQLEKECIQTRSFSQ 135
           P  + C QP CM   + + VV+     PAP Q     + Q +++C+QT+   Q
Sbjct: 124 PAPVQC-QPSCMPACEQSCVVQ----TPAPVQCVPQCQQQCQQQCVQTQPIQQ 171


>Z78065-3|CAB01517.2|  406|Caenorhabditis elegans Hypothetical
           protein T09E8.4 protein.
          Length = 406

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 35/117 (29%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
 Frame = -2

Query: 538 FLHIGFIIPWLDIKENRGLGNESWFLRLLV-SICFQTFFSNSFSFCILFLVTRTK*INVV 362
           FL+I  I     +K++    NE   +R+LV +I    FF  S S   +FL+ +T   N  
Sbjct: 291 FLYIAVIFKIFAMKKSTLNKNE---IRVLVQAIVIFVFFQASSS---VFLICQTIAFNTA 344

Query: 361 VIVVFRCWGGSRGFSTGGQWAGALRPCFAFSRSV*SNLIIPS*YVGKVSGRRLANLL 191
              V +     R  +T   +AGA  PCF+F  S     ++ S  +  VS +  +NL+
Sbjct: 345 TAFVIK-----RIINTLEIFAGAATPCFSFFTSKEIRKLLSS-KIAAVSSQGSSNLV 395


>Z71177-9|CAA94868.2|  425|Caenorhabditis elegans Hypothetical
           protein AC3.4 protein.
          Length = 425

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -1

Query: 293 PETMFCVQPKCMKQFDYTIVVRGEG*RPAPCQLAQILEHQLEKECIQTRSFSQ 135
           P  + C QP CM   + + VV+     PA  Q     + Q +++C+QT+   Q
Sbjct: 124 PAPVQC-QPSCMPACEQSCVVQ----TPAAVQCVPQCQQQCQQQCVQTQPIQQ 171


>U42835-6|AAA83589.2|  816|Caenorhabditis elegans Dehydrogenases,
           short chain protein27 protein.
          Length = 816

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/42 (40%), Positives = 24/42 (57%)
 Frame = +2

Query: 488 SILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGY 613
           SI+L VKP DDE  ++++ NQ     M G LW A++     Y
Sbjct: 436 SIMLCVKPADDEI-VQKIRNQ-----MSGALWSAAQFAVTSY 471


>Z81127-9|CAB03394.3|  735|Caenorhabditis elegans Hypothetical
           protein F09F3.9 protein.
          Length = 735

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 589 LQTCACWVWHK*TANYVCH 645
           LQ CA W+WHK   NY+ +
Sbjct: 187 LQRCA-WLWHKLNENYITY 204


>Z81056-11|CAB02911.3|  735|Caenorhabditis elegans Hypothetical
           protein F09F3.9 protein.
          Length = 735

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +1

Query: 589 LQTCACWVWHK*TANYVCH 645
           LQ CA W+WHK   NY+ +
Sbjct: 187 LQRCA-WLWHKLNENYITY 204


>Z68160-4|CAA92292.1|  583|Caenorhabditis elegans Hypothetical
           protein D1046.4 protein.
          Length = 583

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/61 (22%), Positives = 31/61 (50%)
 Frame = -2

Query: 571 FHFNSAYLVFHFLHIGFIIPWLDIKENRGLGNESWFLRLLVSICFQTFFSNSFSFCILFL 392
           FHF+   +++  +     + W  + ++  + +  ++L ++V I    F+  SF+  IL L
Sbjct: 391 FHFDIQLILYAAIFAFLSLTWPSVFKSSNIISNKYYLPVMVRIHVVLFYFGSFASNILPL 450

Query: 391 V 389
           V
Sbjct: 451 V 451


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,703,193
Number of Sequences: 27780
Number of extensions: 258215
Number of successful extensions: 696
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)