Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_J12
(382 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr... 29 0.25
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 27 0.99
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 0.99
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce... 27 1.3
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 26 1.7
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 26 2.3
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 25 3.0
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 25 3.0
SPCC584.02 |cuf2||Cu metalloregulatory transcription factor Cuf2... 25 3.0
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 25 3.0
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 25 3.0
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 25 4.0
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc... 25 5.3
SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces... 25 5.3
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc... 25 5.3
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac... 24 7.0
SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces p... 24 7.0
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 24 7.0
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 24 7.0
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 24 9.3
>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
aminotransferase Eca39|Schizosaccharomyces pombe|chr
2|||Manual
Length = 380
Score = 29.1 bits (62), Expect = 0.25
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 244 QKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAGE 354
Q + G + DSS +K T +E PLP+ +++ GE
Sbjct: 3 QTAALHGPKPMDSSHIKVTNVKELKPLPEWKSLKFGE 39
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 27.1 bits (57), Expect = 0.99
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Frame = +1
Query: 124 RXATDLKSQLEGFNTSCLRDVDTNEKIVLPSA-------EDVATEKTQKSLFDGIEKFDS 282
+ +TDL +Q E FN C + D + +V A E V E+ + DG+E S
Sbjct: 430 KWSTDLTTQTEVFNKLCDQVSDWDRTLVDNGALISKLYTETVEAEQMSNRIDDGLEYVSS 489
Query: 283 SQ 288
SQ
Sbjct: 490 SQ 491
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 27.1 bits (57), Expect = 0.99
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Frame = +1
Query: 184 VDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLK---HTETQEKNPLPDKDAIEAGE 354
VD ++K+ S ED++ E + +L G E + SSQ + + ET K P P+ + IE
Sbjct: 145 VDEDDKL---SEEDLSKEDLETTL-KGDENYSSSQKEIYDNDETIPKPPSPEVEKIETST 200
Query: 355 GKE 363
E
Sbjct: 201 SVE 203
>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 26.6 bits (56), Expect = 1.3
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = -3
Query: 248 FWVFSVATSSADGSTIFSLVSTSRRQLVLKPSS*LFRSVAXLGEVFQG 105
FW +S+ S G I SL + RQ + +PSS L VFQG
Sbjct: 83 FWGYSLTFSHEGGPYIGSLANFGLRQTLGRPSSGASSVPDILFCVFQG 130
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 26.2 bits (55), Expect = 1.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 243 GLLSGNVFSRRKHNLFIGVDVTETAGVEAFELTLQ 139
G ++G +S +LFIGVD G+ F LQ
Sbjct: 385 GEIAGTAYSSSGDSLFIGVDDPMLGGILEFRRPLQ 419
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 25.8 bits (54), Expect = 2.3
Identities = 10/43 (23%), Positives = 23/43 (53%)
Frame = +1
Query: 202 IVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPD 330
+ L S ED+ + T+ S+ + + +++HT + K +P+
Sbjct: 134 VALKSEEDIPSSVTRLSVVKLVNRVTYERMRHTMLEFKRSIPE 176
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 3.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 245 WVFSVATSSADGSTIFSLVSTSRRQL 168
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 3.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 245 WVFSVATSSADGSTIFSLVSTSRRQL 168
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPCC584.02 |cuf2||Cu metalloregulatory transcription factor
Cuf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 177
Score = 25.4 bits (53), Expect = 3.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 208 LPSAEDVATEKTQKSLFDGIEKFDSSQLKHTE 303
LP +ED+ + SL D + D+SQL E
Sbjct: 117 LPISEDILGYRKPLSLTDASNRIDASQLNEKE 148
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 3.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 245 WVFSVATSSADGSTIFSLVSTSRRQL 168
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 3.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 245 WVFSVATSSADGSTIFSLVSTSRRQL 168
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 25.0 bits (52), Expect = 4.0
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Frame = +1
Query: 136 DLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGI----EKFDSSQLKHTE 303
+L+S L+ SCL+D T+ K ++ +EKTQ+ +FD + +KF +S + +
Sbjct: 24 ELESILKDAKKSCLKDPTTSMKELV-----ACSEKTQQ-VFDDLKRTEKKFHTSLNRFGK 77
Query: 304 TQEK 315
T EK
Sbjct: 78 TLEK 81
>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 329
Score = 24.6 bits (51), Expect = 5.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 250 SLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAG 351
SL +++ D + H EK PLP+ D+ E G
Sbjct: 7 SLKSPLDEEDELKTDHEIDLEKGPLPEYDSEEEG 40
>SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 333
Score = 24.6 bits (51), Expect = 5.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 250 SLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAG 351
SL +++ D + H EK PLP+ D+ E G
Sbjct: 7 SLKSPLDEEDELKTDHEIDLEKGPLPEYDSEEEG 40
>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 24.6 bits (51), Expect = 5.3
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 175 LRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKH 297
L DVDT ++VL E Q+ DGI +FD+ +KH
Sbjct: 200 LADVDTENEVVLSVLEKWIKNVVQEYDIDGI-RFDA--IKH 237
>SPAC1751.01c |gti1||gluconate transporter inducer
Gti1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 24.2 bits (50), Expect = 7.0
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 104 LPERPPQGSPQT*RVSSKASTPAVSVTSTPMKR 202
+P+ PP SP T VS+ +++ A P R
Sbjct: 209 VPKSPPSSSPSTTNVSNASTSSAPINPRAPQTR 241
>SPBC19C7.09c |uve1|uvde|endonuclease Uve1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 24.2 bits (50), Expect = 7.0
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +1
Query: 214 SAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPDKDAIEAGEGKEQI 369
S++ AT+ + + + +DSS ++ K P+ + E+ E +EQI
Sbjct: 112 SSKKKATDSVSDKIDESVASYDSSTHLRRSSRSKKPVNYNSSSES-ESEEQI 162
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 24.2 bits (50), Expect = 7.0
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +2
Query: 116 PPQGSPQT*RVSSKASTPA-VSVTSTP 193
PP SP T +S A+TPA ++ TS P
Sbjct: 211 PPGFSPATPAPTSAANTPATIAATSIP 237
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 24.2 bits (50), Expect = 7.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 229 ATEKTQKSLFDGIEKFDSSQLKHTETQEKNPLPD 330
+T QKSL D E D++ LK + + LPD
Sbjct: 83 STLDLQKSLIDADENVDANVLKDSASIRHVSLPD 116
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 23.8 bits (49), Expect = 9.3
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -1
Query: 316 SSPESRC-ASAGSNQTSRYRRIKTSGSSQWQRLQQTEAQS 200
S+P S AS+ ++ TS +SGSS W R EA S
Sbjct: 237 STPASTSYASSTTSATSTSTTSGSSGSSDWGRSSFYEADS 276
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,404,463
Number of Sequences: 5004
Number of extensions: 25598
Number of successful extensions: 102
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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