Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_J12
         (382 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              21   3.7  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   6.5  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   6.5  

>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = +1

Query: 136 DLKSQLEGFNTSCLRDVDTNEKIV 207
           +LKS L    + C++++ T ++I+
Sbjct: 21  ELKSGLHTVQSVCMKEIGTAQQII 44


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 66  IDSEWPAPXSDTPSLKDLPK 125
           + SEW +  +D  + K +PK
Sbjct: 196 LSSEWDSDYTDKSNEKKIPK 215



 Score = 20.2 bits (40), Expect = 8.5
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -1

Query: 319 GSSPESRCASAGSNQTSRYRRIKTSGSSQWQRLQ 218
           GSS +   +   S+ T +    K   SS W++L+
Sbjct: 190 GSSGDDLSSEWDSDYTDKSNEKKIPKSSGWRKLR 223


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 69  DSEWPAPXSDTP 104
           DSEWP+   D P
Sbjct: 542 DSEWPSYSRDEP 553


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,772
Number of Sequences: 438
Number of extensions: 1995
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9300375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)