Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_J02
         (385 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical...    34   0.030
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ...    34   0.030
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat...    32   0.16 
U23513-5|AAP68948.1|  214|Caenorhabditis elegans Hypothetical pr...    28   2.0  
U23513-4|AAP68947.1|  322|Caenorhabditis elegans Hypothetical pr...    28   2.0  
Z68298-1|CAA92598.2|  342|Caenorhabditis elegans Hypothetical pr...    26   7.9  
AF040641-1|AAB94947.2|  203|Caenorhabditis elegans Calponin prot...    26   7.9  

>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 34.3 bits (75), Expect = 0.030
 Identities = 28/75 (37%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
 Frame = +2

Query: 107  EHGASSCISGKRGRRC---CNIWHWGSVDSISGSHARFQLSGNSGRKHSRCCTSILRKFS 277
            EH   SC+SG  G +C   C   +    D ISG H   Q  G  G+K +R C   L+ + 
Sbjct: 1195 EHCEKSCVSGHYGAKCEETCECENGALCDPISG-HCSCQ-PGWRGKKCNRPC---LKGYF 1249

Query: 278  GRQHCVTVDCCCHGS 322
            GR HC +  C C  S
Sbjct: 1250 GR-HC-SQSCRCANS 1262


>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 34.3 bits (75), Expect = 0.030
 Identities = 28/75 (37%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
 Frame = +2

Query: 107  EHGASSCISGKRGRRC---CNIWHWGSVDSISGSHARFQLSGNSGRKHSRCCTSILRKFS 277
            EH   SC+SG  G +C   C   +    D ISG H   Q  G  G+K +R C   L+ + 
Sbjct: 1195 EHCEKSCVSGHYGAKCEETCECENGALCDPISG-HCSCQ-PGWRGKKCNRPC---LKGYF 1249

Query: 278  GRQHCVTVDCCCHGS 322
            GR HC +  C C  S
Sbjct: 1250 GR-HC-SQSCRCANS 1262


>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
            see also lmb-protein 1 protein.
          Length = 1067

 Score = 31.9 bits (69), Expect = 0.16
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +2

Query: 122  SCISGKRGRRC--CNIWHWGSVDSISGSHARFQLSGN 226
            +C SG +G RC  C   HWGS   + G+  R   +GN
Sbjct: 973  NCKSGYQGERCGECAQNHWGSPREVGGTCERCDCNGN 1009


>U23513-5|AAP68948.1|  214|Caenorhabditis elegans Hypothetical
           protein D2021.2b protein.
          Length = 214

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
 Frame = +2

Query: 173 GSVDSISGSHARFQLSGNSGRKHSR--CCTSILRKFSGRQHCVTVDCCCHGSPH 328
           G V +    H  F     +G +H +  C T  +RK    +HC     C +   H
Sbjct: 23  GVVRAAKNCHQLFVNEAEAGIQHQQKYCFTCFIRKMDHTKHCAVCGFCVNNFDH 76


>U23513-4|AAP68947.1|  322|Caenorhabditis elegans Hypothetical
           protein D2021.2a protein.
          Length = 322

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
 Frame = +2

Query: 173 GSVDSISGSHARFQLSGNSGRKHSR--CCTSILRKFSGRQHCVTVDCCCHGSPH 328
           G V +    H  F     +G +H +  C T  +RK    +HC     C +   H
Sbjct: 131 GVVRAAKNCHQLFVNEAEAGIQHQQKYCFTCFIRKMDHTKHCAVCGFCVNNFDH 184


>Z68298-1|CAA92598.2|  342|Caenorhabditis elegans Hypothetical
           protein F44D12.2 protein.
          Length = 342

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 171 QCHILQHRRPRLPLMQLEAPCSFNFCSLRAIRR 73
           +CH+  +  PRLP ++  + C   FC + A  R
Sbjct: 214 ECHV-DYFNPRLPYVKSGSSCIGQFCFISATSR 245


>AF040641-1|AAB94947.2|  203|Caenorhabditis elegans Calponin protein
           2 protein.
          Length = 203

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = -2

Query: 192 LMESTDPQCHILQHRRPRLPLMQLEAPCSF 103
           L+E  DP C ++ +++P++    +E   +F
Sbjct: 68  LIEKLDPSCRVVYNKKPKMAFPMMENISNF 97


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,763,751
Number of Sequences: 27780
Number of extensions: 132500
Number of successful extensions: 280
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 280
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)