Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_J01
         (602 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC14G10.03c |ump1||proteasome maturation factor Ump1 |Schizosa...    50   3e-07
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    27   1.6  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    25   6.4  
SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyc...    25   6.4  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    25   6.4  
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    25   6.4  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    25   8.5  

>SPCC14G10.03c |ump1||proteasome maturation factor Ump1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 129

 Score = 50.0 bits (114), Expect = 3e-07
 Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
 Frame = +2

Query: 272 HPLEASEKNYHLNEEKLNLAMLRNVQGLHAPMKITMERKFASKVGR-LPFLPSSNLQHDV 448
           HPLE+  KN+   ++++ L  +R + GLH P++  ME+K AS+  R L    S+N   D+
Sbjct: 36  HPLESRLKNWEAQQQQIRLDSMRRIYGLHEPVRREMEQKLASQSSRPLALGGSANFHLDI 95

Query: 449 LTGRYIDIGFEDI 487
           L  R   +   DI
Sbjct: 96  LANREAVLDETDI 108


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 400 LTRKLPLHCNFHWR 359
           L+ +LP+HC  HWR
Sbjct: 284 LSNRLPMHCRDHWR 297


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 293 KNYH-LNEEKLNLAMLRNVQGLHAPMKITMERKFASKVGRLPFL 421
           KN H L    +  ++L+ V  L A   + + R  A K+G  PFL
Sbjct: 14  KNEHFLKYSAIFYSLLKPVVALFACQCLVLIRPLARKIGSFPFL 57


>SPAC2E1P3.02c |amt3||ammonium transporter Amt3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 517

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 203 NTFGIRDPMIAGLGATRPKLGFVHPLEAS 289
           +T GI +  IAGL    P  GFV P  A+
Sbjct: 329 STIGICEGAIAGLVGITPACGFVFPWGAA 357


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1155

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/28 (46%), Positives = 21/28 (75%)
 Frame = -3

Query: 144  SETHCVNIVNS*LGINSLYLDRYVNQNT 61
            S+T+ +N++NS   INS  LD ++NQ+T
Sbjct: 986  SDTY-LNVLNSEGAINSYSLDIHLNQST 1012


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/32 (31%), Positives = 21/32 (65%)
 Frame = +2

Query: 305 LNEEKLNLAMLRNVQGLHAPMKITMERKFASK 400
           + E KL   +LRNV+G+ A ++  ++ +F ++
Sbjct: 140 IREMKLENGLLRNVEGIQAQLRRLIKCQFVAE 171


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 368 KITMERKFASKVGRLPFLPSSNLQHDVLTGRY 463
           + + ER+F  K+  L   P  NL   + TG Y
Sbjct: 876 RFSSERRFRDKIDDLVEFPIDNLDMSMRTGSY 907


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,383,547
Number of Sequences: 5004
Number of extensions: 46597
Number of successful extensions: 94
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)