Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_I22
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1326 - 26158279-26159712                                         32   0.46 
09_04_0646 - 19194261-19195730                                         31   0.80 
09_06_0239 - 21794691-21795986                                         28   7.4  
03_04_0053 + 16873735-16873927,16874011-16874162,16874286-168743...    28   7.4  
05_06_0279 + 26896997-26897457,26898100-26898220,26898310-268985...    27   9.8  
05_04_0104 + 18021671-18021909,18022102-18022282,18022473-180225...    27   9.8  

>08_02_1326 - 26158279-26159712
          Length = 477

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = +1

Query: 448 SNVLGLLSARYYCSSSASPRPSFIFAGGSSCFRL*V---WSAEWRCTRPA 588
           SNV GL+S     +  A P+P+ ++A  SS + L     +S E R  RPA
Sbjct: 223 SNVAGLVSVFEVAAKHADPQPAIVWASSSSVYGLNTDAPFSEEHRTDRPA 272


>09_04_0646 - 19194261-19195730
          Length = 489

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = +1

Query: 448 SNVLGLLSARYYCSSSASPRPSFIFAGGSSCFRL*V---WSAEWRCTRPA 588
           SNV GL++     +  A P+P+ ++A  SS + L     +S E R  RPA
Sbjct: 217 SNVAGLVTVLEVAAKHADPQPAIVWASSSSVYGLNTDAPFSEEHRTDRPA 266


>09_06_0239 - 21794691-21795986
          Length = 431

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +1

Query: 433 GRGSGS--NVLGLLSARYYCSSSASPRPSFIFAGGS 534
           GRG  S  N LG+    Y  SSS +P  S +F GGS
Sbjct: 200 GRGGVSLLNQLGIDRFSYCFSSSGAPGSSAVFLGGS 235


>03_04_0053 +
           16873735-16873927,16874011-16874162,16874286-16874380,
           16874704-16874818,16875054-16875343,16875436-16875585,
           16876478-16876598,16876671-16876942,16877466-16877937
          Length = 619

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = +2

Query: 305 DTEYPRKFGLWQICRTDELEECKGKLEDFL 394
           D E      L   CR D+ E C  K+E FL
Sbjct: 129 DEELRNMISLTLTCRIDQRENCSDKMEQFL 158


>05_06_0279 +
           26896997-26897457,26898100-26898220,26898310-26898586,
           26898735-26898895
          Length = 339

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = -3

Query: 586 PAGYTATPPTRLRAENSWIHPQI*KTVVDWQKKNNNNAQIVNQGHCYRYPDQ 431
           PA    TP    R   +  HP + K  + W++   ++  + ++ HC+R  D+
Sbjct: 65  PARKKRTPGRWRRIPRTLPHPCLRKRPMTWEELLADSLDMSDKAHCFREEDK 116


>05_04_0104 +
           18021671-18021909,18022102-18022282,18022473-18022568,
           18022632-18022672,18022761-18022833,18023036-18023749
          Length = 447

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +2

Query: 521 LRVDPAVFGSESGRRSGGVPGRLERXLSPGDVRPHSRP 634
           L  D A  G   GRR GG  G  E+  +P   R H+ P
Sbjct: 103 LGADGAERGRGGGRRDGGRAGCSEQHHAPAASRRHAEP 140


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,436,088
Number of Sequences: 37544
Number of extensions: 325329
Number of successful extensions: 845
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)