Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_I18
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.14 |aps1|SPAC24B11.03|diadenosine 5',5'''-p1,p6-hexapho...    32   0.080
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    27   1.7  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    27   3.0  
SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|...    27   3.0  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   3.0  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    26   4.0  
SPAC869.09 |||conserved fungal protein|Schizosaccharomyces pombe...    25   6.9  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    25   9.1  

>SPAC13G6.14 |aps1|SPAC24B11.03|diadenosine
           5',5'''-p1,p6-hexaphosphate hydrolase Aps1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 31.9 bits (69), Expect = 0.080
 Identities = 15/37 (40%), Positives = 24/37 (64%)
 Frame = +2

Query: 416 RRAACICVRSDAETEVLLVTSSRRPDNWIVPGGGSRA 526
           R AA +   S  + +VLLV+S+++  +W+VP GG  A
Sbjct: 42  RLAAGVVALSADKRKVLLVSSAKKHPSWVVPKGGWEA 78


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 477 LRDGPTTGLCRAGGVEPEEEPSVTAMREVLEEAGVI 584
           L  GP   L  A  + PEE  S+ ++   L+ AG++
Sbjct: 337 LSSGPPASLYNANALTPEESSSIDSLFANLQAAGLV 372


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = -1

Query: 577 PASSSTSRIAVTE---GSSSGSTPPARHNPVVGPSRRRHQQDL 458
           P  +S+SRI  +     SSS +TPP   +P V PS   H  +L
Sbjct: 7   PTDNSSSRINSSVPLINSSSPATPPESFDPQVFPSSLIHGDNL 49


>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 504 CRAGGVEPEEEPSVTAMREVLEEAGV 581
           C AG +EP E      +RE  EE+GV
Sbjct: 256 CLAGFLEPGESLEEAVVRETYEESGV 281


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -1

Query: 616 SNTPRHRXSFPITPASSSTSRIAVTEGSSSGSTP 515
           S+T  +    P T  S +TS    T GSSS STP
Sbjct: 213 SSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTP 246


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = -1

Query: 625 SRFSNTPRHRXSFPITPASSST---SRIAVTEGSSSGSTP 515
           +R ++TP +  S P  P+SSST   S I  T  S S   P
Sbjct: 107 TRLTSTPSNSSSLPSIPSSSSTPSISSIPHTTSSVSNDIP 146


>SPAC869.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 116

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 538 GSSSGSTPPARHNPVVGPSRRRHQQDL 458
           G+  G    A HNP V    RRH ++L
Sbjct: 81  GNVRGGYKAAMHNPKVSQKGRRHAKEL 107


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -1

Query: 625 SRFSNTPRHRXSFPITPASSSTSRIAVTEGSSSGSTPPARHN 500
           + +SNTP       +TP+++ +S ++    SSS S P    N
Sbjct: 344 ANYSNTPPRNT---VTPSTARSSTLSQNPSSSSNSIPLISRN 382


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,459,964
Number of Sequences: 5004
Number of extensions: 47273
Number of successful extensions: 146
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)