Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_I18
(637 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC084268-2|AAL16324.1| 150|Caenorhabditis elegans Hypothetical ... 51 6e-07
Z72511-3|CAA96657.1| 610|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical pr... 28 6.4
U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical pr... 28 6.4
AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein. 28 6.4
U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical pr... 27 8.5
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 27 8.5
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 27 8.5
U10414-8|AAA19076.1| 272|Caenorhabditis elegans Hypothetical pr... 27 8.5
AL132952-4|CAB61136.1| 185|Caenorhabditis elegans Hypothetical ... 27 8.5
AL033509-1|CAA22059.1| 1494|Caenorhabditis elegans Hypothetical ... 27 8.5
>AC084268-2|AAL16324.1| 150|Caenorhabditis elegans Hypothetical
protein Y92H12BL.5 protein.
Length = 150
Score = 51.2 bits (117), Expect = 6e-07
Identities = 23/54 (42%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Frame = +2
Query: 359 KMVKEKPNSIRIYDDEGFRRRAACICVR-SDAETEVLLVTSSRRPDNWIVPGGG 517
K + + N +R+ D +GFR RAA +C++ + ET VLLV+ + W+VPGGG
Sbjct: 6 KSRESERNKVRLRDTDGFRIRAAALCIKGTGKETLVLLVSGGKDGGKWVVPGGG 59
Score = 36.7 bits (81), Expect = 0.014
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +3
Query: 513 GGVEPEEEPSVTAMREVLEEAGVIGKLXRCLGVFENREHKH 635
GG+E +E A RE++EEAGV + + +G+F++ KH
Sbjct: 58 GGIEKDECAEEAAHRELMEEAGVRATILKKIGMFQDDVRKH 98
>Z72511-3|CAA96657.1| 610|Caenorhabditis elegans Hypothetical
protein F55A11.3 protein.
Length = 610
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1
Query: 577 PASSSTSRIAVTEGSSSGSTPPARHNPVVGPS 482
PA+SS I TE S+ ST P+ +PV S
Sbjct: 549 PATSSAPSIFRTESPSTSSTAPSTSSPVTASS 580
>Z92837-1|CAB07400.1| 1043|Caenorhabditis elegans Hypothetical
protein R03E1.1 protein.
Length = 1043
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 577 PASSSTSRIAVTEGSSSGSTPPARHNPVVGPS 482
P SSS +R + E +S G H+P V PS
Sbjct: 557 PGSSSLNRHGIGEETSDGEESDEPHHPSVAPS 588
>U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical protein
F13B9.1a protein.
Length = 1632
Score = 27.9 bits (59), Expect = 6.4
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +2
Query: 503 VPGGGSRAGRGAFCHCDAGGT*GSRSDRETXTMS 604
V GGG RA RGA + GGT S S M+
Sbjct: 1556 VGGGGLRAARGASRYARVGGTSSSASQAPAGMMA 1589
>AY372076-1|AAQ75758.1| 1043|Caenorhabditis elegans SYM-4 protein.
Length = 1043
Score = 27.9 bits (59), Expect = 6.4
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 577 PASSSTSRIAVTEGSSSGSTPPARHNPVVGPS 482
P SSS +R + E +S G H+P V PS
Sbjct: 557 PGSSSLNRHGIGEETSDGEESDEPHHPSVAPS 588
>U80846-5|AAP82647.1| 825|Caenorhabditis elegans Hypothetical
protein K06A9.1c protein.
Length = 825
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -1
Query: 592 SFPITPASSSTSRIAVTEGSSS--GSTPPARHNPVVG 488
S PI +SSS S + V GSSS GS+ P+ + G
Sbjct: 227 STPIASSSSSGSTVTVVSGSSSTYGSSTPSASSSSAG 263
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -1
Query: 592 SFPITPASSSTSRIAVTEGSSS--GSTPPARHNPVVG 488
S PI +SSS S + V GSSS GS+ P+ + G
Sbjct: 434 STPIASSSSSGSTVTVVSGSSSTYGSSTPSASSSSAG 470
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -1
Query: 592 SFPITPASSSTSRIAVTEGSSS--GSTPPARHNPVVG 488
S PI +SSS S + V GSSS GS+ P+ + G
Sbjct: 434 STPIASSSSSGSTVTVVSGSSSTYGSSTPSASSSSAG 470
>U10414-8|AAA19076.1| 272|Caenorhabditis elegans Hypothetical
protein F42A10.5 protein.
Length = 272
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = -1
Query: 592 SFPITPASSSTSRIAVTEGSSSGSTPPARHNPVVGPS 482
S+P T S S +A + S+ + PAR+ P P+
Sbjct: 212 SYPTTAGSGRDSALAALKMMSAANPAPARNEPAPAPA 248
>AL132952-4|CAB61136.1| 185|Caenorhabditis elegans Hypothetical
protein Y51H4A.4 protein.
Length = 185
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = -1
Query: 580 TPASSSTSRIAVTEGSSSGSTPPARHNPVVGPSRRRHQ 467
+P+SSSTS ++ SGS+ + PV P ++ +
Sbjct: 67 SPSSSSTSSTTSSQNQQSGSSGSKKKKPVPVPENQKDE 104
>AL033509-1|CAA22059.1| 1494|Caenorhabditis elegans Hypothetical
protein Y113G7C.1 protein.
Length = 1494
Score = 27.5 bits (58), Expect = 8.5
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
Frame = -1
Query: 613 NTPRHRXSFPITPASSSTSRIAVTEGSS-------SGSTPPARHNPVVGPSRRR 473
N P+ + S +TP S+ IAV++ + +G PPA V PSRR+
Sbjct: 59 NRPKTQGSPRLTPDSNRAPHIAVSQDALQDYTSIVTGQEPPASPPTVKAPSRRK 112
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,734,389
Number of Sequences: 27780
Number of extensions: 279867
Number of successful extensions: 907
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 906
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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