Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_I18
         (637 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    27   0.12 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.81 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    25   0.81 
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              23   3.3  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    22   5.7  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   5.7  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   5.7  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = -1

Query: 586 PITPASSSTS---RIAVTEGSSSGSTPPARHNPVVG-PSRR 476
           P+   +SS S   RIA    SS+ S+PPA+     G PS+R
Sbjct: 503 PVVETNSSPSPNPRIASAPSSSTSSSPPAKGAAAAGQPSKR 543


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 425 ACICVRSDAETEVLLVTSSRRPDNW 499
           +CICVR  AE   +L  S++  ++W
Sbjct: 487 SCICVRFIAEHTKMLEDSTKVKEDW 511


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 24.6 bits (51), Expect = 0.81
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 425 ACICVRSDAETEVLLVTSSRRPDNW 499
           +CICVR  AE   +L  S++  ++W
Sbjct: 487 SCICVRFIAEHTKMLEDSTKVKEDW 511


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +1

Query: 361 NGKGEA*FDKDI*RRGF*ATGGMYLRAFRCRNRGPAGDVFETAR 492
           NG+ EA + K + +          LRA+ C   G  GD+  T +
Sbjct: 46  NGEEEAYYRKHLLKDADGRVSCPVLRAYTCPICGACGDIAHTVK 89


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 209 STIKLHXVHKXSNYNNN 159
           S++    +H  +NYNNN
Sbjct: 83  SSLSNKTIHNNNNYNNN 99


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 209 STIKLHXVHKXSNYNNN 159
           S++    +H  +NYNNN
Sbjct: 83  SSLSNKTIHNNNNYNNN 99


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -3

Query: 209 STIKLHXVHKXSNYNNN 159
           S++    +H  +NYNNN
Sbjct: 316 SSLSNKTIHNNNNYNNN 332


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,440
Number of Sequences: 438
Number of extensions: 3874
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)