Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_I17
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.12 |||RNA-binding protein Tma20 |Schizosaccharomyces p...   172   3e-44
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces...    27   3.1  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    26   4.1  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   5.5  
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    26   5.5  
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz...    25   7.2  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    25   9.5  

>SPBC31F10.12 |||RNA-binding protein Tma20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 184

 Score =  172 bits (419), Expect = 3e-44
 Identities = 77/175 (44%), Positives = 118/175 (67%), Gaps = 1/175 (0%)
 Frame = +3

Query: 126 KFDEKESISGVQQLKSSVQKGIRARLLELYPHLDNYIDQILPKKDTFRIVKCHDHLEIMV 305
           +F+ +E I G   +KSS+Q+GI+A+L++ YP+L   ID+++PKK     +KC D L  + 
Sbjct: 7   RFNSREDIKGTTPIKSSIQRGIKAKLVQAYPNLKQVIDELIPKKSQLTQIKCEDRL-FLY 65

Query: 306 NSAGDLLFFRHREGPWMPTLKLLHKYPFFVPMQQVDKGAIRFVLSGANIMCPGLTSANAK 485
              G+++ F+H +GP +P+L+L+HK P      +VD+GAI+F+LSGANIM PGL S    
Sbjct: 66  TLNGEIILFQHFDGPIIPSLRLVHKCPDAFTQVRVDRGAIKFLLSGANIMIPGLVSKGGN 125

Query: 486 MSPS-DKGQVVAIMAEGKEHALAIGITTLSTEDIAKVNKGVGVENCHYLNDGLWQ 647
           +    +K Q V + AEGKE   AIG+T +S +++ + NKG+G+EN HYL D LW+
Sbjct: 126 LPDDIEKDQYVIVTAEGKEAPAAIGLTKMSAKEMKETNKGIGIENVHYLGDNLWK 180


>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 220 IWTTTLTRSYPRRIRLGLSNVTITS 294
           +W T L++  P+R  LG+ ++TI S
Sbjct: 333 MWATYLSQCLPKRAALGILSLTIVS 357


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = -1

Query: 650 HLPQPVIEIMTIFNADAFVHF--SYVF 576
           HL +P I+I+ I   + F+HF  SY+F
Sbjct: 608 HLLRPTIKILQISKHEYFLHFSSSYIF 634


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 12/52 (23%), Positives = 29/52 (55%)
 Frame = +3

Query: 123  KKFDEKESISGVQQLKSSVQKGIRARLLELYPHLDNYIDQILPKKDTFRIVK 278
            +K + K ++  ++   ++++  IRA+LL    + D ++ Q +  +   R+VK
Sbjct: 1126 QKNESKAALEQMKNYVTNIENNIRAKLLPSAANDDAWLSQNVVDESVTRVVK 1177


>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 17/76 (22%), Positives = 27/76 (35%)
 Frame = +3

Query: 378 KYPFFVPMQQVDKGAIRFVLSGANIMCPGLTSANAKMSPSDKGQVVAIMAEGKEHALAIG 557
           K  FF+  Q +       +L   +I+C     A+         QV+  +     H   +G
Sbjct: 204 KRVFFMTPQTLQNDLKEHLLDAKSIICLIFDEAHRATGNHSYAQVMRAVLRSNSHFRVLG 263

Query: 558 ITTLSTEDIAKVNKGV 605
           +T       A V K V
Sbjct: 264 LTATPGSSTASVQKVV 279


>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 451

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +3

Query: 222 LDNYIDQILPKKDT--FRIVKCHDHLEIMVNSAGDLLFFRHREGPWMPTLKLL 374
           LD YID ++P+  T   R +K +  + ++ ++AG    + H +       KL+
Sbjct: 194 LDEYIDLVIPRGSTNLVRHIKDNTKIPVLGHAAGLCSMYVHEDADMELASKLV 246


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/39 (33%), Positives = 24/39 (61%)
 Frame = +1

Query: 37  TRVCGSLIIYLVLCFLVIVNCATNTSICLKSLMKRKAYR 153
           T VC  LI++L+   +V+++CA + ++   +    KAYR
Sbjct: 89  TVVC--LILFLLFWIIVLISCADSKALPKNADSILKAYR 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,598,820
Number of Sequences: 5004
Number of extensions: 52079
Number of successful extensions: 146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)