Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_I17
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0032 - 11795368-11795385,11795607-11795670,11795979-117960... 159 2e-39
02_04_0233 - 21135743-21135867,21135970-21136340,21136486-211367... 48 5e-06
05_03_0095 - 8349971-8350171,8350659-8351303 30 1.4
03_01_0551 - 4113134-4113272,4113347-4113507,4113666-4114319 29 2.4
04_03_0811 - 19909128-19912214 28 5.6
04_03_0436 + 15918144-15918377,15918514-15918717,15918813-15918911 28 5.6
08_01_1078 + 11045555-11045673,11045940-11045991,11046230-110462... 28 7.5
08_01_0397 - 3509186-3510291,3510322-3512335 28 7.5
04_04_0605 + 26549904-26551939,26553931-26554180,26554764-265548... 27 9.9
>01_03_0032 -
11795368-11795385,11795607-11795670,11795979-11796046,
11796319-11796455,11796722-11796783,11796889-11796956,
11797045-11797126,11798160-11798269
Length = 202
Score = 159 bits (385), Expect = 2e-39
Identities = 85/173 (49%), Positives = 115/173 (66%), Gaps = 2/173 (1%)
Frame = +3
Query: 141 ESISGVQQLKSSVQKGIRARLLELYPHLDNYIDQILPKKDTFRIVKCHDHLE-IMVNSAG 317
E IS Q+K+SVQ+ IR + + YP L+ +D +LPKK +VKC +HL ++VN+
Sbjct: 41 EDISAQNQVKASVQRKIRQSIADEYPGLEPLLDDLLPKKSPMIVVKCQNHLNLVVVNNVP 100
Query: 318 DLLFFRHREGPWMPTLKLLHKYPFFVPMQQVDKGAIRFVLSGANIMCPGLTSANAKMSPS 497
LFF R+ P ++ K+ QVD+GAI+FVLSGANIMCPGLTS +
Sbjct: 101 --LFFNIRDDP-----DIMKKF-------QVDRGAIKFVLSGANIMCPGLTSPGGSLDVE 146
Query: 498 DKGQV-VAIMAEGKEHALAIGITTLSTEDIAKVNKGVGVENCHYLNDGLWQMK 653
+ + VAIMAEGK+HALAIG T +S +DI +NKG+GV+N HYLNDGLW+M+
Sbjct: 147 VEEETPVAIMAEGKQHALAIGYTKMSAKDIKTINKGIGVDNMHYLNDGLWKME 199
>02_04_0233 -
21135743-21135867,21135970-21136340,21136486-21136757,
21137289-21137397,21137846-21138247,21138376-21138419,
21138539-21138759,21140163-21140274,21140620-21140754
Length = 596
Score = 48.4 bits (110), Expect = 5e-06
Identities = 47/191 (24%), Positives = 85/191 (44%), Gaps = 14/191 (7%)
Frame = +3
Query: 117 MFKKFDEKESISGVQQLKSSVQKGIRARLLELYPHL-DNYIDQILPKKDTFRIVKCHDHL 293
MFKK + + +Q+L + +K +R E +P D +D ILP K + K + +
Sbjct: 1 MFKKHVD---VKALQRLSGADKKKLRRTAKERFPQASDADLDAILPPKVEVTVAKYPNRV 57
Query: 294 EIM-VNSAGDLLFFRHREGPWM-PT----------LKLLHKYPFFVPMQQVDKGAI-RFV 434
+ + +LF G + PT + L K P +P + G + RF+
Sbjct: 58 LVYGIEGEFPMLFDIDGRGHELFPTEHSLTGENIAVYALWKVPDLLPAFTLKGGEVSRFI 117
Query: 435 LSGANIMCPGLTSANAKMSPSDKGQVVAIMAEGKEHALAIGITTLSTEDIAKVNKGVGVE 614
L GA++M PG++ + GQ ++ G +A+G TT+S+ + K G +
Sbjct: 118 LGGADLMFPGISIPPEGLPSFQPGQPWSVKVPGNPAPIAVGATTMSSNEALKA--GDSAD 175
Query: 615 NCHYLNDGLWQ 647
+ N+G ++
Sbjct: 176 GRYVPNEGFYE 186
>05_03_0095 - 8349971-8350171,8350659-8351303
Length = 281
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/63 (23%), Positives = 29/63 (46%)
Frame = +3
Query: 390 FVPMQQVDKGAIRFVLSGANIMCPGLTSANAKMSPSDKGQVVAIMAEGKEHALAIGITTL 569
++P Q+D G +++ + + +TS+ + S Q + + A G A A+G L
Sbjct: 113 YIPAGQIDGGRTQYMATSFTVPAFAVTSSATAAASSSPAQTITVPASGPSPA-AVGAVAL 171
Query: 570 STE 578
E
Sbjct: 172 QQE 174
>03_01_0551 - 4113134-4113272,4113347-4113507,4113666-4114319
Length = 317
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = +3
Query: 348 PWMPTLKLLHKYPFFVPMQ---QVDKGAIRFVLSGANIMCPGLTSANAKMSPSDKGQVVA 518
P +P L L+H + Q QV + RF + +++C G +S+++ PS+ Q A
Sbjct: 50 PRLPPLLLIHGFGPMATWQWRRQVGPFSRRFHIIVPDLLCFGASSSSSSPPPSESAQAAA 109
Query: 519 IM 524
++
Sbjct: 110 LL 111
>04_03_0811 - 19909128-19912214
Length = 1028
Score = 28.3 bits (60), Expect = 5.6
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = +3
Query: 132 DEKESISGVQQLKSSVQKGIRARLLELYPH---LDNYIDQILPKKDTFRIV 275
D+K ISG V G A LL + H L N ID ILPK I+
Sbjct: 303 DQKWHISGKCITNKEVSSGTTALLLSHFSHKPSLLNLIDNILPKLSCLSIL 353
>04_03_0436 + 15918144-15918377,15918514-15918717,15918813-15918911
Length = 178
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/67 (26%), Positives = 34/67 (50%)
Frame = +3
Query: 384 PFFVPMQQVDKGAIRFVLSGANIMCPGLTSANAKMSPSDKGQVVAIMAEGKEHALAIGIT 563
P +++V G+ +S + C G+++ + P + +VA++ HA+A G+T
Sbjct: 6 PATAAVRRVKLGSQGLEVSAQGLGCMGMSAFHGPSKP--EADMVALI----HHAVAAGVT 59
Query: 564 TLSTEDI 584
L T DI
Sbjct: 60 LLDTADI 66
>08_01_1078 +
11045555-11045673,11045940-11045991,11046230-11046279,
11047286-11047439,11048266-11048391
Length = 166
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/21 (52%), Positives = 18/21 (85%)
Frame = -1
Query: 188 ALLDRGLELLHARYAFLFIKL 126
AL+DRG E ++AR++ +F+KL
Sbjct: 50 ALVDRGSEFINARFSPVFLKL 70
>08_01_0397 - 3509186-3510291,3510322-3512335
Length = 1039
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 479 REDVSERQGSSRRHNGRRERTCSSYRYHY 565
R+ +R+ SS RH+ R+R SS R+H+
Sbjct: 15 RDKEKDRERSSSRHHRDRDRERSSSRHHH 43
>04_04_0605 +
26549904-26551939,26553931-26554180,26554764-26554829,
26555194-26555388,26555830-26556141,26556537-26556595,
26557138-26557381,26557466-26557528,26557997-26558386
Length = 1204
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -2
Query: 544 ACSFPSAIMATT*PLSLGDIFALAEVSPGHMMFAPLSTKRIAPLSTC 404
A SFPS + +T P+S D+ A++ +S G + K + L TC
Sbjct: 651 AMSFPSTVTSTASPMS-ADVSAVSGLSGGRIALVTGGNKGVG-LETC 695
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,990,790
Number of Sequences: 37544
Number of extensions: 348547
Number of successful extensions: 854
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -