Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fprWP06_F_I17
         (653 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051886-1|AAK93310.1|  182|Drosophila melanogaster LD37358p pro...   296   1e-80
AE014298-833|AAF46114.1|  182|Drosophila melanogaster CG5941-PA ...   296   1e-80
AY051703-1|AAK93127.1|  563|Drosophila melanogaster LD24540p pro...    65   7e-11
AF260235-1|AAF67203.1|  563|Drosophila melanogaster LIGATIN prot...    65   7e-11
AF186594-2|AAG16724.1|  563|Drosophila melanogaster ligatin prot...    65   7e-11
AE014297-4342|AAN14162.1|  563|Drosophila melanogaster CG31426-P...    65   7e-11
AE014134-2885|AAF53636.3| 1912|Drosophila melanogaster CG7527-PA...    29   7.3  
AE014134-2884|ABI31322.1| 1839|Drosophila melanogaster CG7527-PB...    29   7.3  
Y07662-1|CAA68943.1|  949|Drosophila melanogaster GATA factor pr...    28   9.6  
X76217-1|CAA53807.1|  779|Drosophila melanogaster a box binding ...    28   9.6  
BT011543-1|AAS15679.1|  746|Drosophila melanogaster LD44281p pro...    28   9.6  
AY069823-1|AAL39968.1|  950|Drosophila melanogaster SD07261p pro...    28   9.6  
AE014297-2132|AAN13692.3|  746|Drosophila melanogaster CG3992-PD...    28   9.6  
AE014297-2131|AAF55261.2| 1264|Drosophila melanogaster CG3992-PA...    28   9.6  

>AY051886-1|AAK93310.1|  182|Drosophila melanogaster LD37358p
           protein.
          Length = 182

 Score =  296 bits (727), Expect = 1e-80
 Identities = 130/179 (72%), Positives = 159/179 (88%)
 Frame = +3

Query: 117 MFKKFDEKESISGVQQLKSSVQKGIRARLLELYPHLDNYIDQILPKKDTFRIVKCHDHLE 296
           MFKKF+EK+SIS +QQLKSSVQKGIRA+LLE YP L+++ID ILPKKD++RI KCHDH+E
Sbjct: 1   MFKKFEEKDSISSIQQLKSSVQKGIRAKLLEAYPKLESHIDLILPKKDSYRIAKCHDHIE 60

Query: 297 IMVNSAGDLLFFRHREGPWMPTLKLLHKYPFFVPMQQVDKGAIRFVLSGANIMCPGLTSA 476
           +++N AGD +FFRHR+GPWMPTL+LLHK+P+FV MQQVDKGAIRFVLSGAN+MCPGLTS 
Sbjct: 61  LLLNGAGDQVFFRHRDGPWMPTLRLLHKFPYFVTMQQVDKGAIRFVLSGANVMCPGLTSP 120

Query: 477 NAKMSPSDKGQVVAIMAEGKEHALAIGITTLSTEDIAKVNKGVGVENCHYLNDGLWQMK 653
            A M+P+DK  VVAIMAEGKEHALA+G+ TLST++I   NKG+G+E  H+LNDGLW+ K
Sbjct: 121 GACMTPADKDTVVAIMAEGKEHALAVGLLTLSTQEILAKNKGIGIETYHFLNDGLWKSK 179


>AE014298-833|AAF46114.1|  182|Drosophila melanogaster CG5941-PA
           protein.
          Length = 182

 Score =  296 bits (727), Expect = 1e-80
 Identities = 130/179 (72%), Positives = 159/179 (88%)
 Frame = +3

Query: 117 MFKKFDEKESISGVQQLKSSVQKGIRARLLELYPHLDNYIDQILPKKDTFRIVKCHDHLE 296
           MFKKF+EK+SIS +QQLKSSVQKGIRA+LLE YP L+++ID ILPKKD++RI KCHDH+E
Sbjct: 1   MFKKFEEKDSISSIQQLKSSVQKGIRAKLLEAYPKLESHIDLILPKKDSYRIAKCHDHIE 60

Query: 297 IMVNSAGDLLFFRHREGPWMPTLKLLHKYPFFVPMQQVDKGAIRFVLSGANIMCPGLTSA 476
           +++N AGD +FFRHR+GPWMPTL+LLHK+P+FV MQQVDKGAIRFVLSGAN+MCPGLTS 
Sbjct: 61  LLLNGAGDQVFFRHRDGPWMPTLRLLHKFPYFVTMQQVDKGAIRFVLSGANVMCPGLTSP 120

Query: 477 NAKMSPSDKGQVVAIMAEGKEHALAIGITTLSTEDIAKVNKGVGVENCHYLNDGLWQMK 653
            A M+P+DK  VVAIMAEGKEHALA+G+ TLST++I   NKG+G+E  H+LNDGLW+ K
Sbjct: 121 GACMTPADKDTVVAIMAEGKEHALAVGLLTLSTQEILAKNKGIGIETYHFLNDGLWKSK 179


>AY051703-1|AAK93127.1|  563|Drosophila melanogaster LD24540p
           protein.
          Length = 563

 Score = 65.3 bits (152), Expect = 7e-11
 Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 7/167 (4%)
 Frame = +3

Query: 165 LKSSVQKGIRARLLELYPHLDNYIDQILPKKDTFRIVKC--HDHLEIMVNSAGDL-LFFR 335
           LK S  K  R R+   +PH+   +DQ++P K     VK   H  ++ MV     L LFF 
Sbjct: 14  LKGSDSKKFRQRVEAAFPHVS--VDQLVPAKAAVTQVKILTHGGVQSMVYCVDKLPLFFE 71

Query: 336 HREGPWMPTLKLLHKYPFFVPMQQVDKGAIRFVLSGANIMCPGLTSANAKMS---PSDKG 506
              G  +PTL  L   P  +P     +G +  + +GA++M PG+      +S      KG
Sbjct: 72  LDGGQLVPTLYTLWIVPDILPYFTTHEGVLPKLTNGADLMLPGVVPLGVGLSMYGHFKKG 131

Query: 507 QVVAIMAEGKEHALAIGITTLSTEDIAKV-NKGVGVENCHYLNDGLW 644
           Q++A+     + A+ +G    S++++      GV ++  H   D LW
Sbjct: 132 QLMAVNLTNNKSAVGVGQLARSSDELYMCGGHGVAIKMLHLFGDKLW 178


>AF260235-1|AAF67203.1|  563|Drosophila melanogaster LIGATIN
           protein.
          Length = 563

 Score = 65.3 bits (152), Expect = 7e-11
 Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 7/167 (4%)
 Frame = +3

Query: 165 LKSSVQKGIRARLLELYPHLDNYIDQILPKKDTFRIVKC--HDHLEIMVNSAGDL-LFFR 335
           LK S  K  R R+   +PH+   +DQ++P K     VK   H  ++ MV     L LFF 
Sbjct: 14  LKGSDSKKFRQRVEAAFPHVS--VDQLVPAKAAVTQVKILTHGGVQSMVYCVDKLPLFFE 71

Query: 336 HREGPWMPTLKLLHKYPFFVPMQQVDKGAIRFVLSGANIMCPGLTSANAKMS---PSDKG 506
              G  +PTL  L   P  +P     +G +  + +GA++M PG+      +S      KG
Sbjct: 72  LDGGQLVPTLYTLWIVPDILPYFTTHEGVLPKLTNGADLMLPGVVPLGVGLSMYGHFKKG 131

Query: 507 QVVAIMAEGKEHALAIGITTLSTEDIAKV-NKGVGVENCHYLNDGLW 644
           Q++A+     + A+ +G    S++++      GV ++  H   D LW
Sbjct: 132 QLMAVNLTNNKSAVGVGQLARSSDELYMCGGHGVAIKMLHLFGDKLW 178


>AF186594-2|AAG16724.1|  563|Drosophila melanogaster ligatin
           protein.
          Length = 563

 Score = 65.3 bits (152), Expect = 7e-11
 Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 7/167 (4%)
 Frame = +3

Query: 165 LKSSVQKGIRARLLELYPHLDNYIDQILPKKDTFRIVKC--HDHLEIMVNSAGDL-LFFR 335
           LK S  K  R R+   +PH+   +DQ++P K     VK   H  ++ MV     L LFF 
Sbjct: 14  LKGSDSKKFRQRVEAAFPHVS--VDQLVPAKAAVTQVKILTHGGVQSMVYCVDKLPLFFE 71

Query: 336 HREGPWMPTLKLLHKYPFFVPMQQVDKGAIRFVLSGANIMCPGLTSANAKMS---PSDKG 506
              G  +PTL  L   P  +P     +G +  + +GA++M PG+      +S      KG
Sbjct: 72  LDGGQLVPTLYTLWIVPDILPYFTTHEGVLPKLTNGADLMLPGVVPLGVGLSMYGHFKKG 131

Query: 507 QVVAIMAEGKEHALAIGITTLSTEDIAKV-NKGVGVENCHYLNDGLW 644
           Q++A+     + A+ +G    S++++      GV ++  H   D LW
Sbjct: 132 QLMAVNLTNNKSAVGVGQLARSSDELYMCGGHGVAIKMLHLFGDKLW 178


>AE014297-4342|AAN14162.1|  563|Drosophila melanogaster CG31426-PA
           protein.
          Length = 563

 Score = 65.3 bits (152), Expect = 7e-11
 Identities = 48/167 (28%), Positives = 78/167 (46%), Gaps = 7/167 (4%)
 Frame = +3

Query: 165 LKSSVQKGIRARLLELYPHLDNYIDQILPKKDTFRIVKC--HDHLEIMVNSAGDL-LFFR 335
           LK S  K  R R+   +PH+   +DQ++P K     VK   H  ++ MV     L LFF 
Sbjct: 14  LKGSDSKKFRQRVEAAFPHVS--VDQLVPAKAAVTQVKILTHGGVQSMVYCVDKLPLFFE 71

Query: 336 HREGPWMPTLKLLHKYPFFVPMQQVDKGAIRFVLSGANIMCPGLTSANAKMS---PSDKG 506
              G  +PTL  L   P  +P     +G +  + +GA++M PG+      +S      KG
Sbjct: 72  LDGGQLVPTLYTLWIVPDILPYFTTHEGVLPKLTNGADLMLPGVVPLGVGLSMYGHFKKG 131

Query: 507 QVVAIMAEGKEHALAIGITTLSTEDIAKV-NKGVGVENCHYLNDGLW 644
           Q++A+     + A+ +G    S++++      GV ++  H   D LW
Sbjct: 132 QLMAVNLTNNKSAVGVGQLARSSDELYMCGGHGVAIKMLHLFGDKLW 178


>AE014134-2885|AAF53636.3| 1912|Drosophila melanogaster CG7527-PA,
            isoform A protein.
          Length = 1912

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 403  CIGTKNGYLCSSFKVGIQGPSRCLKNSKS 317
            C+ T+NG  C +  VG  GP RC ++++S
Sbjct: 1101 CVETRNGPKCVACPVGYNGP-RCQQSTRS 1128


>AE014134-2884|ABI31322.1| 1839|Drosophila melanogaster CG7527-PB,
            isoform B protein.
          Length = 1839

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -2

Query: 403  CIGTKNGYLCSSFKVGIQGPSRCLKNSKS 317
            C+ T+NG  C +  VG  GP RC ++++S
Sbjct: 1028 CVETRNGPKCVACPVGYNGP-RCQQSTRS 1055


>Y07662-1|CAA68943.1|  949|Drosophila melanogaster GATA factor
           protein.
          Length = 949

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 17/70 (24%), Positives = 25/70 (35%)
 Frame = +3

Query: 438 SGANIMCPGLTSANAKMSPSDKGQVVAIMAEGKEHALAIGITTLSTEDIAKVNKGVGVEN 617
           + ++  CPG  + +A  S    G          EH        LS    A    G+   N
Sbjct: 436 AASSYSCPGSNATSAATSAVASGTAATAATTLDEHVSRANSRRLS----ASKRAGLSCSN 491

Query: 618 CHYLNDGLWQ 647
           CH  +  LW+
Sbjct: 492 CHTTHTSLWR 501


>X76217-1|CAA53807.1|  779|Drosophila melanogaster a box binding
           factor (ABF), alsocalled dGATA-b protein.
          Length = 779

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 17/70 (24%), Positives = 25/70 (35%)
 Frame = +3

Query: 438 SGANIMCPGLTSANAKMSPSDKGQVVAIMAEGKEHALAIGITTLSTEDIAKVNKGVGVEN 617
           + ++  CPG  + +A  S    G          EH        LS    A    G+   N
Sbjct: 266 AASSYSCPGSNATSAATSAVASGTAATAATTLDEHVSRANSRRLS----ASKRAGLSCSN 321

Query: 618 CHYLNDGLWQ 647
           CH  +  LW+
Sbjct: 322 CHTTHTSLWR 331


>BT011543-1|AAS15679.1|  746|Drosophila melanogaster LD44281p
           protein.
          Length = 746

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 17/70 (24%), Positives = 25/70 (35%)
 Frame = +3

Query: 438 SGANIMCPGLTSANAKMSPSDKGQVVAIMAEGKEHALAIGITTLSTEDIAKVNKGVGVEN 617
           + ++  CPG  + +A  S    G          EH        LS    A    G+   N
Sbjct: 232 AASSYSCPGSNATSAATSAVASGTAATAATTLDEHVSRANSRRLS----ASKRAGLSCSN 287

Query: 618 CHYLNDGLWQ 647
           CH  +  LW+
Sbjct: 288 CHTTHTSLWR 297


>AY069823-1|AAL39968.1|  950|Drosophila melanogaster SD07261p
           protein.
          Length = 950

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 17/70 (24%), Positives = 25/70 (35%)
 Frame = +3

Query: 438 SGANIMCPGLTSANAKMSPSDKGQVVAIMAEGKEHALAIGITTLSTEDIAKVNKGVGVEN 617
           + ++  CPG  + +A  S    G          EH        LS    A    G+   N
Sbjct: 436 AASSYSCPGSNATSAATSAVASGTAATAATTLDEHVSRANSRRLS----ASKRAGLSCSN 491

Query: 618 CHYLNDGLWQ 647
           CH  +  LW+
Sbjct: 492 CHTTHTSLWR 501


>AE014297-2132|AAN13692.3|  746|Drosophila melanogaster CG3992-PD,
           isoform D protein.
          Length = 746

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 17/70 (24%), Positives = 25/70 (35%)
 Frame = +3

Query: 438 SGANIMCPGLTSANAKMSPSDKGQVVAIMAEGKEHALAIGITTLSTEDIAKVNKGVGVEN 617
           + ++  CPG  + +A  S    G          EH        LS    A    G+   N
Sbjct: 232 AASSYSCPGSNATSAATSAVASGTAATAATTLDEHVSRANSRRLS----ASKRAGLSCSN 287

Query: 618 CHYLNDGLWQ 647
           CH  +  LW+
Sbjct: 288 CHTTHTSLWR 297


>AE014297-2131|AAF55261.2| 1264|Drosophila melanogaster CG3992-PA,
           isoform A protein.
          Length = 1264

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 17/70 (24%), Positives = 25/70 (35%)
 Frame = +3

Query: 438 SGANIMCPGLTSANAKMSPSDKGQVVAIMAEGKEHALAIGITTLSTEDIAKVNKGVGVEN 617
           + ++  CPG  + +A  S    G          EH        LS    A    G+   N
Sbjct: 750 AASSYSCPGSNATSAATSAVASGTAATAATTLDEHVSRANSRRLS----ASKRAGLSCSN 805

Query: 618 CHYLNDGLWQ 647
           CH  +  LW+
Sbjct: 806 CHTTHTSLWR 815


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,362,112
Number of Sequences: 53049
Number of extensions: 585730
Number of successful extensions: 1558
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1558
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2786177250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)