Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fprWP06_F_I17
(653 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF045640-2|AAM81123.1| 185|Caenorhabditis elegans Hypothetical ... 240 5e-64
U29535-14|AAK31455.3| 516|Caenorhabditis elegans Hypothetical p... 36 0.033
U23518-5|AAO38653.1| 448|Caenorhabditis elegans Nuclear hormone... 29 3.8
U23518-4|ABB88231.1| 450|Caenorhabditis elegans Nuclear hormone... 29 3.8
U23518-8|AAO38654.1| 400|Caenorhabditis elegans Nuclear hormone... 28 5.0
U23518-7|AAO38655.1| 440|Caenorhabditis elegans Nuclear hormone... 28 5.0
U23518-6|AAD31548.2| 446|Caenorhabditis elegans Nuclear hormone... 28 5.0
AF098985-1|AAC67419.2| 882|Caenorhabditis elegans Hypothetical ... 28 5.0
AF083234-1|AAD03692.1| 400|Caenorhabditis elegans nuclear recep... 28 5.0
AF083233-1|AAD03691.1| 458|Caenorhabditis elegans nuclear recep... 28 5.0
Z81043-8|CAB02804.2| 550|Caenorhabditis elegans Hypothetical pr... 28 6.7
U61237-1|AAB17542.1| 550|Caenorhabditis elegans M89 protein. 28 6.7
AL023813-2|CAA19424.2| 550|Caenorhabditis elegans Hypothetical ... 28 6.7
Z81063-1|CAB02952.1| 376|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z46934-7|CAA87047.1| 472|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z37983-7|CAA86058.1| 1106|Caenorhabditis elegans Hypothetical pr... 27 8.8
AF040655-4|AAB95046.3| 125|Caenorhabditis elegans Hypothetical ... 27 8.8
>AF045640-2|AAM81123.1| 185|Caenorhabditis elegans Hypothetical
protein C11D2.7 protein.
Length = 185
Score = 240 bits (588), Expect = 5e-64
Identities = 104/179 (58%), Positives = 145/179 (81%), Gaps = 1/179 (0%)
Frame = +3
Query: 117 MFKKFDEKESISGVQQLKSSVQKGIRARLLELYPHLDNYIDQILPKKDTFRIVKCHDHLE 296
MFKKFDEKE ++G QLKSSVQKGIR +L+E +P+L+ ++++ILPKK+ F+++KC DH+E
Sbjct: 1 MFKKFDEKEDVTGATQLKSSVQKGIRKKLIENFPYLEPHLEEILPKKENFKVIKCKDHIE 60
Query: 297 IMVNSAGDLLFFRHREGPWMPTLKLLHKYPFFVPMQQVDKGAIRFVLSGANIMCPGLTSA 476
++ + G + F + R ++PTL+ LHKYPF +P QQVDKGAI+F+L+G++IMCPGLTS
Sbjct: 61 LLADHLGVVRFVKTRNTDYIPTLRTLHKYPFILPHQQVDKGAIKFILNGSSIMCPGLTSP 120
Query: 477 NAKMSP-SDKGQVVAIMAEGKEHALAIGITTLSTEDIAKVNKGVGVENCHYLNDGLWQM 650
AK++P K VVA+MAEGK+HALAIG+ ++S+E+I VNKG G+EN HYLNDGLW +
Sbjct: 121 GAKLTPLVPKDSVVAVMAEGKQHALAIGLMSMSSEEIQSVNKGNGIENLHYLNDGLWHL 179
>U29535-14|AAK31455.3| 516|Caenorhabditis elegans Hypothetical
protein C25H3.4 protein.
Length = 516
Score = 35.5 bits (78), Expect = 0.033
Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 7/115 (6%)
Frame = +3
Query: 321 LLFFRHREGPWMPTLKLLHKYPFFVPMQQVDKGAIRFVLSGANIMCPGLTSANAKMSPS- 497
+LF G PT+ + P+ + ++ +GA++M PG+ ++ P+
Sbjct: 65 MLFEFSENGNIYPTVYYMWNNQKTFPVLICHEPVFSYLENGADLMLPGVIRSSIFPFPTF 124
Query: 498 DKGQVVAIMAEGKEHAL-----AIGITTLSTEDIAKVN-KGVGVENCHYLNDGLW 644
KG VAI E A+G + +S+E++ KG GV+ H D LW
Sbjct: 125 RKGAPVAIAFYSSETETVSGPSAVGCSMMSSEEMVVCGFKGKGVQVLHVFRDQLW 179
>U23518-5|AAO38653.1| 448|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform a protein.
Length = 448
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = +3
Query: 444 ANIMCPGLTSANAKMSPSDKGQVVAIMAEGKEHALAIGITTLSTEDIAKVNKGVGVENCH 623
A + CPG+ AN PSDK Q + G+T LS E ++K + + +
Sbjct: 293 AKVGCPGVCYANGAYHPSDKRQ------QAFPDVNYRGVTELSVETVSKPLANINITDAE 346
Query: 624 YL 629
L
Sbjct: 347 ML 348
>U23518-4|ABB88231.1| 450|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform e protein.
Length = 450
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = +3
Query: 444 ANIMCPGLTSANAKMSPSDKGQVVAIMAEGKEHALAIGITTLSTEDIAKVNKGVGVENCH 623
A + CPG+ AN PSDK Q + G+T LS E ++K + + +
Sbjct: 295 AKVGCPGVCYANGAYHPSDKRQ------QAFPDVNYRGVTELSVETVSKPLANINITDAE 348
Query: 624 YL 629
L
Sbjct: 349 ML 350
>U23518-8|AAO38654.1| 400|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform b protein.
Length = 400
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = +3
Query: 444 ANIMCPGLTSANAKMSPSDKGQVVAIMAEGKEHALAIGITTLSTEDIAKVNKGVGVENCH 623
A + CPG+ AN PSDK Q + K G+T LS E ++K + + +
Sbjct: 247 AKVGCPGVCYANGAYHPSDKRQ--QAFPDVK------GVTELSVETVSKPLANINITDAE 298
Query: 624 YL 629
L
Sbjct: 299 ML 300
>U23518-7|AAO38655.1| 440|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform c protein.
Length = 440
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = +3
Query: 444 ANIMCPGLTSANAKMSPSDKGQVVAIMAEGKEHALAIGITTLSTEDIAKVNKGVGVENCH 623
A + CPG+ AN PSDK Q + K G+T LS E ++K + + +
Sbjct: 287 AKVGCPGVCYANGAYHPSDKRQ--QAFPDVK------GVTELSVETVSKPLANINITDAE 338
Query: 624 YL 629
L
Sbjct: 339 ML 340
>U23518-6|AAD31548.2| 446|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform d protein.
Length = 446
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = +3
Query: 444 ANIMCPGLTSANAKMSPSDKGQVVAIMAEGKEHALAIGITTLSTEDIAKVNKGVGVENCH 623
A + CPG+ AN PSDK Q + K G+T LS E ++K + + +
Sbjct: 293 AKVGCPGVCYANGAYHPSDKRQ--QAFPDVK------GVTELSVETVSKPLANINITDAE 344
Query: 624 YL 629
L
Sbjct: 345 ML 346
>AF098985-1|AAC67419.2| 882|Caenorhabditis elegans Hypothetical
protein C08G5.1 protein.
Length = 882
Score = 28.3 bits (60), Expect = 5.0
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Frame = +3
Query: 183 KGIRARLLE---LYPHLDNYIDQILPKKDTFRIVKCHDHLEIMVNSAGDLLFFRHREGPW 353
KG++ LE L + + ++ +L K DTF +LE ++ + + F+H+
Sbjct: 197 KGLKESNLEWDKLESNFEEDLNSVLSKMDTFSEKPDKTNLERIITAITECTTFKHKLFES 256
Query: 354 MPTLKLLHKYPFFVPMQQVDKGAIR 428
+ KLL PM + +G ++
Sbjct: 257 LSKFKLLRGKDKAYPMLEKSRGFLK 281
>AF083234-1|AAD03692.1| 400|Caenorhabditis elegans nuclear receptor
NHR-21b protein.
Length = 400
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = +3
Query: 444 ANIMCPGLTSANAKMSPSDKGQVVAIMAEGKEHALAIGITTLSTEDIAKVNKGVGVENCH 623
A + CPG+ AN PSDK Q + K G+T LS E ++K + + +
Sbjct: 247 AKVGCPGVCYANGAYHPSDKRQ--QAFPDVK------GVTELSVETVSKPLANINITDAE 298
Query: 624 YL 629
L
Sbjct: 299 ML 300
>AF083233-1|AAD03691.1| 458|Caenorhabditis elegans nuclear receptor
NHR-21a protein.
Length = 458
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = +3
Query: 444 ANIMCPGLTSANAKMSPSDKGQVVAIMAEGKEHALAIGITTLSTEDIAKVNKGVGVENCH 623
A + CPG+ AN PSDK Q + K G+T LS E ++K + + +
Sbjct: 305 AKVGCPGVCYANGAYHPSDKRQ--QAFPDVK------GVTELSVETVSKPLANINITDAE 356
Query: 624 YL 629
L
Sbjct: 357 ML 358
>Z81043-8|CAB02804.2| 550|Caenorhabditis elegans Hypothetical
protein C29F3.2 protein.
Length = 550
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 219 EGTVPKGEPLCPSGPRT*AVARPICFPFH 133
E T+P + PSG ARP CF +H
Sbjct: 24 ESTIPFSLEILPSGHPVLGCARPTCFGWH 52
>U61237-1|AAB17542.1| 550|Caenorhabditis elegans M89 protein.
Length = 550
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 219 EGTVPKGEPLCPSGPRT*AVARPICFPFH 133
E T+P + PSG ARP CF +H
Sbjct: 24 ESTIPFSLEILPSGHPVLGCARPTCFGWH 52
>AL023813-2|CAA19424.2| 550|Caenorhabditis elegans Hypothetical
protein C29F3.2 protein.
Length = 550
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 219 EGTVPKGEPLCPSGPRT*AVARPICFPFH 133
E T+P + PSG ARP CF +H
Sbjct: 24 ESTIPFSLEILPSGHPVLGCARPTCFGWH 52
>Z81063-1|CAB02952.1| 376|Caenorhabditis elegans Hypothetical
protein F15D3.2 protein.
Length = 376
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +1
Query: 220 IWTTTLTRSYPRRIRLGLSNVTITSR*W*TVPATCYSSDIARVPGCQP*NYC 375
IW R P + + L VT + W VP+ Y++ + C NYC
Sbjct: 316 IWAPDFPRCSPM-LEM-LEGVTYVTDGWINVPSNFYANYVCETSTCDTDNYC 365
>Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical
protein B0024.8 protein.
Length = 1185
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +3
Query: 132 DEKESISGVQQLKSSVQKGIRARLLELYPHLDNYI 236
D + ISG++++K V + + L PHL +Y+
Sbjct: 280 DANQRISGLEKMKQVVDQITPEEIARLVPHLHSYL 314
>Z46934-7|CAA87047.1| 472|Caenorhabditis elegans Hypothetical
protein ZK1320.9 protein.
Length = 472
Score = 27.5 bits (58), Expect = 8.8
Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +3
Query: 333 RH-REGPWMPTLKLLHKYPFFVPMQQVDKGAIRFVLSGANIMCPGLTSA 476
RH GP +PT KLLH P FVP A+ V S ++I SA
Sbjct: 19 RHFTNGPRLPT-KLLHAKPGFVPKYVSADEALAMVNSDSDIYVGNHASA 66
>Z37983-7|CAA86058.1| 1106|Caenorhabditis elegans Hypothetical
protein B0393.5 protein.
Length = 1106
Score = 27.5 bits (58), Expect = 8.8
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = +1
Query: 316 ATCYSSDIARVPGCQP*NYCTNIRSSFRC 402
A C D V C P C+N R S++C
Sbjct: 526 AHCTDRDECAVEPCHPAAICSNTRGSYKC 554
>AF040655-4|AAB95046.3| 125|Caenorhabditis elegans Hypothetical
protein T24E12.6 protein.
Length = 125
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +3
Query: 117 MFKKFDEKESISGVQQLKSSVQKGIRARLLELYP-HLDNYIDQILPKKDTFRIVKCHDHL 293
++KKF+++++ Q +++K I RLLE+ H+ N + + K F+ ++ H+
Sbjct: 25 IYKKFEQRDAKMTYDQNAVNIKKRIHRRLLEVIKFHVKN--QKKIQKDYFFKYLQSGQHI 82
Query: 294 E 296
E
Sbjct: 83 E 83
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,638,195
Number of Sequences: 27780
Number of extensions: 310182
Number of successful extensions: 903
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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